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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537134 (25 seq.)
>WENV180283933
OBID01006806
[OBID] metagenome; sludge
1639
1564
-
Trp
CCA
[ENA]
¢þ
>C08000275
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1896346
1896274
-
Trp
CCA
[Ensembl]
¡û
>WENV170657702
JTFP01011293
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
292
217
-
Trp
CCA
[ENA]
¢þ
>C181225272
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1896339
1896264
-
Trp
CCA
-
¡û
>C191084442
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2415484
2415409
-
Trp
CCA
-
¡û
>C191084598
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2242655
2242580
-
Trp
CCA
-
¡û
>C191178292
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1850043
1849968
-
Trp
CCA
-
¡û
>C141005653
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1771373
1771298
-
Trp
CCA
[Ensembl]
¡û
>W1911200226
NREO01000010
Campylobacterota
Arcobacter suis CECT7833 [NREO]
19215
19290
+
Trp
CCA
[ENA]
¡û
>W1911426347
NXIG01000016
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
35968
35893
-
Trp
CCA
[ENA]
¡û
>W1911426432
NXII01000007
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
116020
115945
-
Trp
CCA
[ENA]
¡û
>W1911746064
QVQX01000017
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
13327
13252
-
Trp
CCA
[ENA]
¡û
>W1911775194
QXMK01000014
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
13316
13241
-
Trp
CCA
[ENA]
¡û
>W1911775386
QXNB01000019
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
18036
18111
+
Trp
CCA
[ENA]
¡û
>C11100396
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1774452
1774377
-
Trp
CCA
[Ensembl]
¡û
>W1510762845
JAIQ01000129
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
1719
1794
+
Trp
CCA
[ENA]
¡û
>W1510762856
JAIR01000026
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
19579
19504
-
Trp
CCA
[ENA]
¡û
>W1510762907
JAIS01000069
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W1510762929
JAIT01000018
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762956
JAIU01000016
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762992
JAIV01000061
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
17309
17234
-
Trp
CCA
[ENA]
¡û
>W1510763014
JAIW01000018
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510763061
JAIX01000064
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W11143302
AEPT01000030
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
16227
16152
-
Trp
CCA
[ENA]
¡û
>W11167780
AFNL01000071
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
13498
13423
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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