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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.544078 (18 seq.)
>W131240102
BAOB01000203
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
77
2
-
His
GTG
[ENA]
¡û
>W131240126
BAOB01000568
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
3
78
+
His
GTG
[ENA]
¡û
>W131240128
BAOB01000569
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
120
195
+
His
GTG
[ENA]
¡û
>W131240129
BAOB01000570
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
3
78
+
His
GTG
[ENA]
¡û
>W131240677
BAOJ01000072
Gammaproteobacteria
Vibrio sagamiensis NBRC 104589 [BAOJ]
209
134
-
His
GTG
[ENA]
¡û
>W141230920
BATL01000064
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BATL]
11029
11104
+
His
GTG
[ENA]
¡û
>W141230921
BATL01000065
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BATL]
40
115
+
His
GTG
[ENA]
¡û
>WENV170012500
ASRK01009374
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
12
-
His
GTG
[ENA]
¡û
>WENV170704230
LLEJ01000289
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
6145
6220
+
His
GTG
[ENA]
¡û
>C181062901
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
547145
547070
-
His
GTG
-
¡û
>C181062903
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
546969
546894
-
His
GTG
-
¡û
>W2010103005
BJXJ01000017
Gammaproteobacteria
Vibrio sagamiensis NBRC 104589 [BJXJ]
83805
83730
-
His
GTG
[ENA]
¡û
>W2110359286
JADNRT010000001
Gammaproteobacteria
Vibrio sp. VB16 [JADNRT]
3277901
3277976
+
His
GTG
[ENA]
¡û
>W2110359288
JADNRT010000001
Gammaproteobacteria
Vibrio sp. VB16 [JADNRT]
3278151
3278226
+
His
GTG
[ENA]
¡û
>C231242246
CP087590
Gammaproteobacteria
Vibrio sp. VB16 [CP087590, CP087591]
44854
44929
+
His
GTG
-
¡û
>C231242248
CP087590
Gammaproteobacteria
Vibrio sp. VB16 [CP087590, CP087591]
45104
45179
+
His
GTG
-
¡û
>C231309497
CP091975
Gammaproteobacteria
Vibrio sp. DW001 [CP091975, CP091976]
46181
46256
+
His
GTG
-
¡û
>C231309499
CP091975
Gammaproteobacteria
Vibrio sp. DW001 [CP091975, CP091976]
46509
46584
+
His
GTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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