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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.545497 (13 seq.)
>WENV180043526
LQAI01000290
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
285
210
-
Thr
GGT
[ENA]
¡û
>WENV180043976
LQAJ01000139
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
29513
29588
+
Thr
GGT
[ENA]
¡û
>WENV183707037
PDWI01006423
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16614
16539
-
Thr
GGT
[ENA]
¡û
>WENV183747537
PPCM01004177
[PPCM] marine sediment metagenome; marine sediment
1703
1628
-
Thr
GGT
[ENA]
¡û
>WENV170438399
CEUU01114576
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5728
5653
-
Thr
GGT
[ENA]
¡û
>WENV170439799
CEUV01052254
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
198
123
-
Thr
GGT
[ENA]
¡û
>WENV170896361
MDTD01094401
[MDTD] marine metagenome; seawater
11197
11272
+
Thr
GGT
[ENA]
¡û
>WENV170896362
MDTD01094401
[MDTD] marine metagenome; seawater
11348
11423
+
Thr
GGT
[ENA]
¡û
>C181226974
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
671452
671527
+
Thr
GGT
-
¡û
>C241149539
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3484309
3484384
+
Thr
GGT
-
¡û
>C241149540
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3484624
3484699
+
Thr
GGT
-
¡û
>C241149542
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3484954
3485029
+
Thr
GGT
-
¡û
>C131017956
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
427663
427588
-
Thr
GGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK