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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.545501 (16 seq.)
>W1711069108
LSFI01000050
Thermodesulfobacteriota
Thermodesulfatator autotrophicus [LSFI]
229
154
-
Gly
TCC
[ENA]
¡û
>W131218020
ATXH01000026
Thermodesulfobacteriota
Thermodesulfatator atlanticus DSM 21156 [ATXH]
597
522
-
Gly
TCC
[ENA]
¡û
>WENV180043536
LQAI01000466
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
7046
6971
-
Gly
TCC
[ENA]
¡û
>WENV183705321
PDWI01001379
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
35584
35509
-
Gly
TCC
[ENA]
¡û
>WENV183746975
PPCM01000080
[PPCM] marine sediment metagenome; marine sediment
157734
157809
+
Gly
TCC
[ENA]
¡û
>WENV170419478
CEUM01129283
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12795
12870
+
Gly
TCC
[ENA]
¡û
>WENV170438714
CEUU01231858
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
155
230
+
Gly
TCC
[ENA]
¡û
>WENV170439039
CEUV01009454
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6062
5987
-
Gly
TCC
[ENA]
¡û
>WENV170901924
MDTD01177896
[MDTD] marine metagenome; seawater
7059
7134
+
Gly
TCC
[ENA]
¡û
>C181226989
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4100454
4100529
+
Gly
TCC
-
¡û
>C231004593
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
3696540
3696615
+
Gly
TCC
-
¡û
>C241108988
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2586073
2586148
+
Gly
TCC
-
¡û
>C241149550
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3941272
3941197
-
Gly
TCC
-
¡û
>C11122783
CP002683
Thermodesulfobacteriota
Thermodesulfatator indicus DSM 15286 [CP002683]
300445
300370
-
Gly
TCC
[Ensembl]
¡û
>C131017937
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3576955
3577030
+
Gly
TCC
[Ensembl]
¡û
>W1610909678
LSFI01000050
Thermodesulfobacteriota
Thermodesulfatator autotrophicus [LSFI]
229
154
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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