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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55701 (22 seq.)
>WENV180022323
FTFY01000838
[FTFY] metagenome; soil
12826
12915
+
Ser
TGA
[ENA]
¡û
>W1911572405
PDBX01000002
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
49000
48911
-
Ser
TGA
[ENA]
¡û
>W1810400009
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1062689
1062600
-
Ser
TGA
[ENA]
¡û
>C151062621
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
3169713
3169624
-
Ser
TGA
[Ensembl]
¡û
>W2010534895
JAAOZT010000002
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JAAOZT]
755770
755859
+
Ser
TGA
[ENA]
¡û
>W2010702819
JACHHQ010000001
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JACHHQ]
756080
756169
+
Ser
TGA
[ENA]
¡û
>W2011182826
PDBX01000002
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
49000
48911
-
Ser
TGA
[ENA]
¡û
>W2011353323
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
3319607
3319518
-
Ser
TGA
[ENA]
¡û
>W2012047528
VIVV01000001
Betaproteobacteria
Collimonas arenae 515 [VIVV]
444353
444442
+
Ser
TGA
[ENA]
¡û
>W2012509421
WXXL01000020
Betaproteobacteria
PMB3(1) [WXXL]
254345
254256
-
Ser
TGA
[ENA]
¡û
>W2110566768
JAGQED010000002
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
96640
96729
+
Ser
TGA
[ENA]
¡û
>W2110566806
JAGQEE010000001
Betaproteobacteria
Collimonas sp. RLT1W51 [JAGQEE]
451216
451305
+
Ser
TGA
[ENA]
¡û
>W2110566868
JAGQEF010000005
Betaproteobacteria
Collimonas sp. RXD172-2 [JAGQEF]
17580
17491
-
Ser
TGA
[ENA]
¡û
>C211274233
CP070304
Betaproteobacteria
Glaciimonas sp. PAMC28666 [CP070304]
4533213
4533302
+
Ser
TGA
-
¡û
>C11105063
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2150734
2150823
+
Ser
TGA
[Ensembl]
¡û
>C161053584
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
2445693
2445782
+
Ser
TGA
[Ensembl]
¡û
>C161053684
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
2423838
2423927
+
Ser
TGA
[Ensembl]
¡û
>C161053808
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
3119322
3119233
-
Ser
TGA
[Ensembl]
¡û
>W1710530374
FNOR01000019
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
99451
99540
+
Ser
TGA
[ENA]
¡û
>W1710556432
FOKF01000001
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
124344
124433
+
Ser
TGA
[ENA]
¡û
>W1710557512
FOLC01000001
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
291124
291213
+
Ser
TGA
[ENA]
¡û
>W1710564233
FOQI01000014
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
43476
43387
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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