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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5736 (6 seq.)
>WENV180051275
MPLU02201213
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
191
286
+
SeC
TCA
[ENA]
¡û
>WENV180055236
MPLV02145663
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
3831
3926
+
SeC
TCA
[ENA]
¡û
>WENV180059282
MPLX02103478
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
290
385
+
SeC
TCA
[ENA]
¡û
>WENV183809749
PVBE011416357
[PVBE] marine metagenome; water
16644
16739
+
SeC
TCA
[ENA]
¡û
>WENV170395924
CEUC01149065
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1017
922
-
SeC
TCA
[ENA]
¡û
>WENV170880177
MDTC01108155
[MDTC] marine metagenome; seawater
3422
3327
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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