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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5811 (38 seq.)
>C171083839
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
922857
922764
-
Ser
GCT
-
¡û
>C171094251
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
860086
859993
-
Ser
GCT
-
¡û
>WENV180527079
OCHI01192223
[OCHI] human gut metagenome; human gut
81
174
+
Ser
GCT
[ENA]
¡û
>WENV180679241
OCVV012207728
[OCVV] gut metagenome; gut
103
10
-
Ser
GCT
[ENA]
¡û
>WENV180679242
OCVV012207728
[OCVV] gut metagenome; gut
103
10
-
Ser
GCT
[ENA]
¡û
>WENV180851672
ODKV01145595
[ODKV] human metagenome; G_DNA_Stool
238
145
-
Ser
GCT
[ENA]
¡û
>WENV181090018
OEBA01238786
[OEBA] human metagenome; G_DNA_Stool
3
96
+
Ser
GCT
[ENA]
¡û
>WENV181389161
OFRM01092022
[OFRM] wastewater metagenome; Exp Tend VB 0WW
162
255
+
Ser
GCT
[ENA]
¡û
>WENV181883097
OGXI01001687
[OGXI] human gut metagenome; faeces
5116
5023
-
Ser
GCT
[ENA]
¡û
>WENV181913961
OGYE01056319
[OGYE] human gut metagenome; faeces
489
582
+
Ser
GCT
[ENA]
¡û
>WENV181916308
OGYF01090615
[OGYF] human gut metagenome; faeces
305
212
-
Ser
GCT
[ENA]
¡û
>WENV181929076
OGYO01009728
[OGYO] human gut metagenome; faeces
696
603
-
Ser
GCT
[ENA]
¡û
>WENV181973275
OHAA01022901
[OHAA] human gut metagenome; faeces
1358
1265
-
Ser
GCT
[ENA]
¡û
>WENV182009704
OHBJ01035156
[OHBJ] human gut metagenome; faeces
1258
1351
+
Ser
GCT
[ENA]
¡û
>WENV182632667
OJKW01108827
[OJKW] metagenome; faeces
217
310
+
Ser
GCT
[ENA]
¡û
>WENV182885805
OKSC01027358
[OKSC] human gut metagenome; faeces
701
794
+
Ser
GCT
[ENA]
¡û
>WENV183131252
OLOA01022559
[OLOA] human gut metagenome; faeces
1939
2032
+
Ser
GCT
[ENA]
¡û
>WENV170068530
CDZP01010304
[CDZP] gut metagenome; human stools
1209
1116
-
Ser
GCT
[ENA]
¡û
>WENV170070187
CDZQ01016522
[CDZQ] gut metagenome; human stools
1168
1261
+
Ser
GCT
[ENA]
¡û
>WENV170110771
CECF01043589
[CECF] gut metagenome; human stools
894
801
-
Ser
GCT
[ENA]
¡û
>W09119202
ACDP01000042
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
98854
98947
+
Ser
GCT
[ENA]
¡û
>W09119245
ACDQ01000011
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
160398
160491
+
Ser
GCT
[ENA]
¡û
>W2010264343
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1502655
1502748
+
Ser
GCT
[ENA]
¡û
>W2010288938
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
1487191
1487284
+
Ser
GCT
[ENA]
¡û
>W2011692207
SSSP01000007
Betaproteobacteria
Rhodocyclus tenuis Pfennig 2761 [SSSP]
168577
168484
-
Ser
GCT
[ENA]
¡û
>W2110639773
JAHRBI010000004
Betaproteobacteria
Burkholderiaceae bacterium DAT-1 [JAHRBI]
84589
84682
+
Ser
GCT
[ENA]
¡û
>C201107534
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
1827275
1827368
+
Ser
GCT
-
¡û
>W2110753961
NRRZ01000002
Betaproteobacteria
Rhodocyclus tenuis IM 230 [NRRZ]
505539
505446
-
Ser
GCT
[ENA]
¡û
>C231399324
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
707253
707160
-
Ser
GCT
-
¡û
>C231399338
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
1428183
1428276
+
Ser
GCT
-
¡û
>C231399409
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
1122266
1122173
-
Ser
GCT
-
¡û
>C231399458
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
939034
938941
-
Ser
GCT
-
¡û
>C231399481
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
1385568
1385661
+
Ser
GCT
-
¡û
>C231399565
CP098248
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-1 [CP098248]
667249
667156
-
Ser
GCT
-
¡û
>C231399583
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
1383245
1383338
+
Ser
GCT
-
¡û
>C231399653
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
1002510
1002417
-
Ser
GCT
-
¡û
>C231399711
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
873687
873594
-
Ser
GCT
-
¡û
>C231399761
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
816862
816769
-
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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