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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58240 (66 seq.)
>W1710870409
LMKM01000011
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
68492
68405
-
Ser
TGA
[ENA]
¡û
>W1710871289
LMLE01000012
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
100914
100999
+
Ser
TGA
[ENA]
¡û
>W1710888315
LMZQ01000007
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
237138
237223
+
Ser
TGA
[ENA]
¡û
>W1711502843
MKTB01000018
Bacteroidota
Bacteroidetes bacterium 43-16 [MKTB]
80308
80223
-
Ser
TGA
[ENA]
¡û
>W1711621483
MPDD01000008
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
45985
45898
-
Ser
TGA
[ENA]
¡û
>W1711713342
MTCZ01000016
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
17917
17832
-
Ser
TGA
[ENA]
¡û
>W1711713357
MTCZ01000052
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
12721
12634
-
Ser
TGA
[ENA]
¡û
>W1711713459
MTDC01000038
Bacteroidota
Flavobacterium covae columnare [MTDC]
11278
11193
-
Ser
TGA
[ENA]
¡û
>W1711713462
MTDC01000056
Bacteroidota
Flavobacterium covae columnare [MTDC]
12060
12147
+
Ser
TGA
[ENA]
¡û
>W1711713521
MTDD01000031
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
2474
2387
-
Ser
TGA
[ENA]
¡û
>W1711713538
MTDD01000045
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
3537
3450
-
Ser
TGA
[ENA]
¡û
>C171086267
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2551820
2551733
-
Ser
TGA
-
¡û
>C171086282
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
1547949
1547862
-
Ser
TGA
-
¡û
>C171117364
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
373736
373649
-
Ser
TGA
-
¡û
>WENV180111752
OAPN01167084
[OAPN] marine metagenome; 2011
166
253
+
Ser
TGA
[ENA]
¢þ
>WENV181170465
OEIV010049350
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
893
978
+
Ser
TGA
[ENA]
¢þ
>WENV181368078
OFQG01003544
[OFQG] freshwater metagenome; Freshwater Lake
463
376
-
Ser
TGA
[ENA]
¢þ
>WENV181376413
OFQZ01042324
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
701
788
+
Ser
TGA
[ENA]
¢þ
>WENV181841135
OGVQ01006021
[OGVQ] freshwater metagenome; freshwater
444
529
+
Ser
TGA
[ENA]
¢þ
>WENV181843920
OGVV01000668
[OGVV] freshwater metagenome; freshwater
1996
2083
+
Ser
TGA
[ENA]
¢þ
>WENV183726929
PJTO01000634
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
8054
7969
-
Ser
TGA
[ENA]
¢þ
>WENV183728261
PJTQ01000006
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
257672
257757
+
Ser
TGA
[ENA]
¢þ
>WENV183734826
PJUA01000037
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
76799
76884
+
Ser
TGA
[ENA]
¢þ
>WENV183736018
PJUC01000001
[PJUC] soil metagenome; Soil enriched on filter paper
257672
257757
+
Ser
TGA
[ENA]
¢þ
>WENV170009359
APMI01000104
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
425443
425356
-
Ser
TGA
[ENA]
¢þ
>WENV170220124
CEPZ01088422
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16038
16125
+
Ser
TGA
[ENA]
¢þ
>WENV170229469
CEQG01123306
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
902
989
+
Ser
TGA
[ENA]
¢þ
>WENV171003111
NNBT01001364
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
198994
198907
-
Ser
TGA
[ENA]
¢þ
>C141012342
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1827868
1827783
-
Ser
TGA
-
¡û
>W1910804210
MTDB01000012
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
34939
34854
-
Ser
TGA
[ENA]
¡û
>W1910804211
MTDB01000013
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
40806
40891
+
Ser
TGA
[ENA]
¡û
>W1910808985
MUGU01000038
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
13234
13149
-
Ser
TGA
[ENA]
¡û
>W1910809018
MUGU01000117
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
20151
20236
+
Ser
TGA
[ENA]
¡û
>W1911496542
OCMT01000001
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1251288
1251203
-
Ser
TGA
[ENA]
¡û
>W1911496543
OCMT01000001
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1250816
1250730
-
Ser
TGA
[ENA]
¡û
>W1911647669
QAJQ01000026
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
172971
173060
+
Ser
TGA
[ENA]
¡û
>W1810503865
QBKL01000014
Bacteroidota
Pedobacter sp. OK291 [QBKL]
439603
439516
-
Ser
TGA
[ENA]
¡û
>W1810586308
QFFG01000003
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
266058
265973
-
Ser
TGA
[ENA]
¡û
>W1810704212
QMHN01000001
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
743326
743411
+
Ser
TGA
[ENA]
¡û
>W1810704213
QMHN01000001
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
744229
744314
+
Ser
TGA
[ENA]
¡û
>W1810704253
QMHO01000002
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
286680
286591
-
Ser
TGA
[ENA]
¡û
>W1810720073
QNQU01000004
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
113819
113734
-
Ser
TGA
[ENA]
¡û
>W1810761076
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
244151
244064
-
Ser
TGA
[ENA]
¡û
>W1810885481
QUNJ01000002
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
1193601
1193688
+
Ser
TGA
[ENA]
¡û
>W1810885520
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
341150
341063
-
Ser
TGA
[ENA]
¡û
>W1511297073
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
1321902
1321815
-
Ser
TGA
[ENA]
¡û
>W1511390957
JSYN01000006
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
143748
143835
+
Ser
TGA
[ENA]
¡û
>W1511526840
JYGZ01000003
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
352285
352198
-
Ser
TGA
[ENA]
¡û
>W1511594975
LBMH01000004
Bacteroidota
Kordia zhangzhouensis MCCC 1A00726 [LBMH]
478697
478784
+
Ser
TGA
[ENA]
¡û
>W1511646551
LECU01000003
Bacteroidota
Pedobacter sp. BMA [LECU]
298027
298112
+
Ser
TGA
[ENA]
¡û
>C161095465
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2735
2822
+
Ser
TGA
-
¡û
>C161095500
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2169948
2170035
+
Ser
TGA
-
¡û
>W121063661
AJLG01000053
Bacteroidota
Pedobacter agri PB92 [AJLG]
25968
25881
-
Ser
TGA
[ENA]
¡û
>W121063674
AJLG01000104
Bacteroidota
Pedobacter agri PB92 [AJLG]
3727
3814
+
Ser
TGA
[ENA]
¡û
>C131013446
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
917860
917773
-
Ser
TGA
[Ensembl]
¡û
>W1610732755
LMKM01000011
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
68492
68405
-
Ser
TGA
[ENA]
¡û
>W1610733635
LMLE01000012
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
100914
100999
+
Ser
TGA
[ENA]
¡û
>W1610748693
LMZQ01000007
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
237138
237223
+
Ser
TGA
[ENA]
¡û
>W1710516038
FNCH01000001
Bacteroidota
Pedobacter terrae [FNCH]
608805
608890
+
Ser
TGA
[ENA]
¡û
>W1710516048
FNCH01000006
Bacteroidota
Pedobacter terrae [FNCH]
209920
210005
+
Ser
TGA
[ENA]
¡û
>W1710517866
FNDQ01000006
Bacteroidota
Myroides phaeus [FNDQ]
332
245
-
Ser
TGA
[ENA]
¡û
>W1710517903
FNDQ01000018
Bacteroidota
Myroides phaeus [FNDQ]
28734
28821
+
Ser
TGA
[ENA]
¡û
>W1710517904
FNDQ01000018
Bacteroidota
Myroides phaeus [FNDQ]
40143
40230
+
Ser
TGA
[ENA]
¡û
>W1710517917
FNDQ01000039
Bacteroidota
Myroides phaeus [FNDQ]
243
156
-
Ser
TGA
[ENA]
¡û
>W1710555438
FOJM01000001
Bacteroidota
Pedobacter suwonensis [FOJM]
336380
336465
+
Ser
TGA
[ENA]
¡û
>W1710555457
FOJM01000006
Bacteroidota
Pedobacter suwonensis [FOJM]
30288
30203
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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