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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5884 (48 seq.)
>W131058347
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
1979122
1979029
-
Ser
GCT
[ENA]
¡û
>W1711081292
LSSA01000400
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
36568
36477
-
Ser
GCT
[ENA]
¡û
>W1711335786
MBRD01000024
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
13108
13015
-
Ser
GCT
[ENA]
¡û
>W1711711321
MTAV01000020
Cyanobacteriota
Nostoc sp. T09 [MTAV]
19067
19158
+
Ser
GCT
[ENA]
¡û
>W1711711363
MTAW01000104
Cyanobacteriota
Nostoc sp. 106C [MTAW]
23611
23702
+
Ser
GCT
[ENA]
¡û
>W1711711432
MTAX01000067
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
205118
205209
+
Ser
GCT
[ENA]
¡û
>C001219
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
6024598
6024507
-
Ser
GCT
[Ensembl]
¡û
>C015275
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
2199183
2199274
+
Ser
GCT
[Ensembl]
¡û
>w002279
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
16267
16363
+
Ser
GCT
[ENA]
¡û
>W141038763
ALWD01000122
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
36328
36235
-
Ser
GCT
[ENA]
¡û
>C08006950
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3435740
3435647
-
Ser
GCT
[Ensembl]
¡û
>WENV171003192
NNBT01002290
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
572
663
+
Ser
GCT
[ENA]
¢þ
>WENV171003463
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
25110
25019
-
Ser
GCT
[ENA]
¢þ
>WENV171003768
NNBV01000698
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2309
2218
-
Ser
GCT
[ENA]
¢þ
>C181004762
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
7548051
7548142
+
Ser
GCT
-
¡û
>C181105259
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
4338524
4338431
-
Ser
GCT
-
¡û
>C181137787
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
854584
854491
-
Ser
GCT
-
¡û
>C181137846
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5260759
5260668
-
Ser
GCT
-
¡û
>C191001234
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2241641
2241734
+
Ser
GCT
-
¡û
>W09101163
AAEA01000019
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
101083
101176
+
Ser
GCT
[ENA]
¡û
>W1910008425
BDGE01000103
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
49050
49143
+
Ser
GCT
[ENA]
¡û
>W1910020519
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6403405
6403498
+
Ser
GCT
[ENA]
¡û
>W1910596212
LAGX01000040
Cyanobacteriota
Nostoc linckia z1 [LAGX]
15759
15666
-
Ser
GCT
[ENA]
¡û
>W1910596303
LAGY01000054
Cyanobacteriota
Nostoc linckia z2 [LAGY]
15723
15630
-
Ser
GCT
[ENA]
¡û
>W1910596360
LAGZ01000007
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
241914
241821
-
Ser
GCT
[ENA]
¡û
>W1910596541
LAHB01000038
Cyanobacteriota
Nostoc linckia z6 [LAHB]
15631
15538
-
Ser
GCT
[ENA]
¡û
>W1910596611
LAHC01000031
Cyanobacteriota
Nostoc linckia z7 [LAHC]
29008
28915
-
Ser
GCT
[ENA]
¡û
>W1910596694
LAHD01000032
Cyanobacteriota
Nostoc linckia z8 [LAHD]
7815
7722
-
Ser
GCT
[ENA]
¡û
>W1910596887
LAHF01000062
Cyanobacteriota
Nostoc linckia z13 [LAHF]
7777
7684
-
Ser
GCT
[ENA]
¡û
>W1910597124
LAHI01000046
Cyanobacteriota
Nostoc linckia z16 [LAHI]
10108
10015
-
Ser
GCT
[ENA]
¡û
>W1910597221
LAHJ01000046
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
7891
7798
-
Ser
GCT
[ENA]
¡û
>W1910646673
LWSY01000162
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
57737
57646
-
Ser
GCT
[ENA]
¡û
>W1910792673
MRBZ01000030
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
26787
26878
+
Ser
GCT
[ENA]
¡û
>W1911118694
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
5283
5190
-
Ser
GCT
[ENA]
¡û
>W1911118729
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
462603
462512
-
Ser
GCT
[ENA]
¡û
>W1911118797
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
59461
59552
+
Ser
GCT
[ENA]
¡û
>W1511397122
JTCM01000057
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
218761
218854
+
Ser
GCT
[ENA]
¡û
>C161002534
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2199844
2199751
-
Ser
GCT
[Ensembl]
¡û
>C161038932
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
517503
517410
-
Ser
GCT
[Ensembl]
¡û
>W1610003550
AGCR01000054
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
36299
36208
-
Ser
GCT
[ENA]
¡û
>C131004161
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
4840966
4840873
-
Ser
GCT
[Ensembl]
¡û
>C131004274
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5641118
5641211
+
Ser
GCT
[Ensembl]
¡û
>C131004913
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
3598492
3598585
+
Ser
GCT
[Ensembl]
¡û
>C131010296
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4126269
4126362
+
Ser
GCT
[Ensembl]
¡û
>W1610656818
LJOR01000079
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
26992
26899
-
Ser
GCT
[ENA]
¡û
>W1611066493
MBRD01000024
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
13108
13015
-
Ser
GCT
[ENA]
¡û
>W1710004170
AGCR01000054
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
36299
36208
-
Ser
GCT
[ENA]
¡û
>W1710088022
BDUC01000003
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
601521
601614
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK