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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59458 (66 seq.)
>W1711339809
MCAP01000014
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
10495
10409
-
Leu
CAG
[ENA]
¡û
>W1711688917
MSDP01000013
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
92
178
+
Leu
CAG
[ENA]
¡û
>W1711688963
MSDP01000085
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
725
811
+
Leu
CAG
[ENA]
¡û
>W1711750443
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
24917
25003
+
Leu
CAG
[ENA]
¡û
>C171073677
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
2441639
2441553
-
Leu
CAG
-
¡û
>C171092354
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
773314
773228
-
Leu
CAG
-
¡û
>C171092355
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
773205
773119
-
Leu
CAG
-
¡û
>C006997
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
997924
997838
-
Leu
CAG
[Ensembl]
¡û
>C006999
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
997691
997605
-
Leu
CAG
[Ensembl]
¡û
>W141093349
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
599791
599705
-
Leu
CAG
[ENA]
¡û
>W141093350
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
599665
599579
-
Leu
CAG
[ENA]
¡û
>WENV170657502
JTFO01171080
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
271
185
-
Leu
CAG
[ENA]
¢þ
>WENV170679831
LFCJ01000690
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
18171
18085
-
Leu
CAG
[ENA]
¢þ
>WENV170679832
LFCJ01000690
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
18044
17958
-
Leu
CAG
[ENA]
¢þ
>WENV170821083
MDSY01015919
[MDSY] marine metagenome; seawater
2639
2553
-
Leu
CAG
[ENA]
¢þ
>W141557587
JHVH01000001
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
32825
32911
+
Leu
CAG
[ENA]
¡û
>W141557588
JHVH01000001
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
32951
33037
+
Leu
CAG
[ENA]
¡û
>W141727058
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
147466
147380
-
Leu
CAG
[ENA]
¡û
>W1911245449
NSKB01000005
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
466854
466768
-
Leu
CAG
[ENA]
¡û
>W1911245450
NSKB01000005
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
466745
466659
-
Leu
CAG
[ENA]
¡û
>W1911747098
QWBW01000020
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
8571
8485
-
Leu
CAG
[ENA]
¡û
>W1911747099
QWBW01000020
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
8398
8312
-
Leu
CAG
[ENA]
¡û
>W1911747100
QWBW01000020
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
8287
8201
-
Leu
CAG
[ENA]
¡û
>W1810062634
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
507016
506930
-
Leu
CAG
[ENA]
¡û
>W1810062669
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
59997
60083
+
Leu
CAG
[ENA]
¡û
>W1810177433
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
59912
59998
+
Leu
CAG
[ENA]
¡û
>W1810199946
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
59438
59524
+
Leu
CAG
[ENA]
¡û
>W1810200062
PNRG01000025
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
124
210
+
Leu
CAG
[ENA]
¡û
>W1810364754
PVTM01000006
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
58787
58873
+
Leu
CAG
[ENA]
¡û
>W1810423955
PYUD01000001
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
236850
236764
-
Leu
CAG
[ENA]
¡û
>W1810423956
PYUD01000001
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
236685
236599
-
Leu
CAG
[ENA]
¡û
>W1810424643
PYUQ02000010
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
29235
29321
+
Leu
CAG
[ENA]
¡û
>W1810424644
PYUQ02000010
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
29369
29455
+
Leu
CAG
[ENA]
¡û
>W1810425965
PYVV01000002
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
127145
127059
-
Leu
CAG
[ENA]
¡û
>W1810425966
PYVV01000002
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
126993
126907
-
Leu
CAG
[ENA]
¡û
>W1810426073
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
1084575
1084661
+
Leu
CAG
[ENA]
¡û
>W1810444129
PZJL01000008
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
71965
71879
-
Leu
CAG
[ENA]
¡û
>W1810444130
PZJL01000008
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
71831
71745
-
Leu
CAG
[ENA]
¡û
>W1810444201
PZJM01000013
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
72081
71995
-
Leu
CAG
[ENA]
¡û
>W1810444202
PZJM01000013
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
71947
71861
-
Leu
CAG
[ENA]
¡û
>W1810444212
PZJN01000001
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
194993
195079
+
Leu
CAG
[ENA]
¡û
>W1810444337
PZJP01000003
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
212724
212810
+
Leu
CAG
[ENA]
¡û
>W1810444790
PZJW01000005
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
218677
218763
+
Leu
CAG
[ENA]
¡û
>W1810444791
PZJW01000005
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
218811
218897
+
Leu
CAG
[ENA]
¡û
>W1810608647
QGTM01000002
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
156493
156407
-
Leu
CAG
[ENA]
¡û
>W1810609432
QGTY01000006
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
96963
97049
+
Leu
CAG
[ENA]
¡û
>W1810609434
QGTY01000006
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
97196
97282
+
Leu
CAG
[ENA]
¡û
>W1810624139
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
509945
509859
-
Leu
CAG
[ENA]
¡û
>W1810624140
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
509811
509725
-
Leu
CAG
[ENA]
¡û
>W1810722061
QNTU01000007
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
171602
171516
-
Leu
CAG
[ENA]
¡û
>W1510071596
CDGR01000103
Gammaproteobacteria
Halomonas salina B6 [CDGR]
84348
84262
-
Leu
CAG
[ENA]
¡û
>C11110099
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
2968269
2968355
+
Leu
CAG
[Ensembl]
¡û
>C11110100
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
2968398
2968484
+
Leu
CAG
[Ensembl]
¡û
>W1511053621
JIBT01000006
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
114336
114422
+
Leu
CAG
[ENA]
¡û
>W1511053622
JIBT01000006
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
114459
114545
+
Leu
CAG
[ENA]
¡û
>W1511319657
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1337173
1337259
+
Leu
CAG
[ENA]
¡û
>W1511500040
JXAS01000005
Gammaproteobacteria
Halomonas caseinilytica WD26 [JXAS]
91458
91371
-
Leu
CAG
[ENA]
¡û
>W121123970
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
60083
60169
+
Leu
CAG
[ENA]
¡û
>W121123971
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
60249
60335
+
Leu
CAG
[ENA]
¡û
>W1710521355
FNGI01000002
Gammaproteobacteria
Halomonas muralis [FNGI]
470554
470640
+
Leu
CAG
[ENA]
¡û
>W1710521356
FNGI01000002
Gammaproteobacteria
Halomonas muralis [FNGI]
470672
470758
+
Leu
CAG
[ENA]
¡û
>W1710539151
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
173286
173200
-
Leu
CAG
[ENA]
¡û
>W1710539152
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
173153
173067
-
Leu
CAG
[ENA]
¡û
>W1710544863
FOBC01000007
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
147299
147213
-
Leu
CAG
[ENA]
¡û
>W1710577172
FPAQ01000005
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
88499
88413
-
Leu
CAG
[ENA]
¡û
>W1710577173
FPAQ01000005
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
88370
88284
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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