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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60495 (38 seq.)
>W1710855574
LLYX01000010
Bacillota
Christensenella hongkongensis [LLYX]
533
619
+
Leu
CAA
[ENA]
¡û
>W1710855589
LLYX01000032
Bacillota
Christensenella hongkongensis [LLYX]
24360
24446
+
Leu
CAA
[ENA]
¡û
>W1711089653
LSZW01000063
Bacillota
Christensenella minuta [LSZW]
19262
19348
+
Leu
CAA
[ENA]
¡û
>W1711090891
LTBA01000029
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
21114
21028
-
Leu
CAA
[ENA]
¡û
>W1711178660
LWGY01000001
Bacillota
Christensenella minuta [LWGY]
490381
490295
-
Leu
CAA
[ENA]
¡û
>W1711302005
MAIQ01000005
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
204710
204796
+
Leu
CAA
[ENA]
¡û
>W1711302022
MAIR01000001
Bacillota
Christensenella minuta [MAIR]
244083
244169
+
Leu
CAA
[ENA]
¡û
>W1711629246
MPOT01000029
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
66320
66404
+
Leu
CAA
[ENA]
¡û
>W1711629251
MPOT01000041
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
10
96
+
Leu
CAA
[ENA]
¡û
>W1711629621
MPPE01000005
Bacillota
Tepidanaerobacter sp. EBM-49 [MPPE]
143842
143756
-
Leu
CAA
[ENA]
¡û
>W1711629628
MPPE01000032
Bacillota
Tepidanaerobacter sp. EBM-49 [MPPE]
44369
44453
+
Leu
CAA
[ENA]
¡û
>C171040818
CP015756
Bacillota
Clostridium estertheticum subsp. estertheticum DSM 8809 [CP015756]
3321784
3321870
+
Leu
CAA
-
¡û
>C171130812
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
1876943
1876857
-
Leu
CAA
-
¡û
>WENV182874822
OKRW01039400
[OKRW] human gut metagenome; faeces
697
611
-
Leu
CAA
[ENA]
¢þ
>WENV170563914
CZCB01036392
[CZCB] anaerobic digester metagenome; anaerobic digester
514
430
-
Leu
CAA
[ENA]
¢þ
>C181136174
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
505855
505769
-
Leu
CAA
-
¡û
>C191063502
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
1126613
1126527
-
Leu
CAA
-
¡û
>C191184254
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2565102
2565186
+
Leu
CAA
-
¡û
>C191222129
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
581562
581476
-
Leu
CAA
-
¡û
>W1910129076
BHYK01000003
Bacillota
Clostridium tagluense A121 [BHYK]
258878
258964
+
Leu
CAA
[ENA]
¡û
>W1910213010
FMJL01000003
Bacillota
Clostridium sp. N3C [FMJL]
43830
43747
-
Leu
CAA
[ENA]
¡û
>W1910501425
FYAM01000024
Bacillota
Clostridium sp. BSD9I1 [FYAM]
124486
124572
+
Leu
CAA
[ENA]
¡û
>W1911491337
OAOD01000003
Bacillota
Clostridium peptidivorans [OAOD]
83632
83546
-
Leu
CAA
[ENA]
¡û
>W1810010418
BFFN01000001
Bacillota
Moorella sp. Hama-1 [BFFN]
281943
282029
+
Leu
CAA
[ENA]
¡û
>W1510725106
CXYU01000016
Bacillota
Clostridiales bacterium mt11 [CXYU]
27286
27372
+
Leu
CAA
[ENA]
¡û
>W1511187010
JMFY01000017
Bacillota
Clostridium sp. HMP27 [JMFY]
101023
100937
-
Leu
CAA
[ENA]
¡û
>C11122591
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
1656460
1656374
-
Leu
CAA
[Ensembl]
¡û
>W1511585266
LAYJ01000033
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
63972
63886
-
Leu
CAA
[ENA]
¡û
>W1610061663
BCMU01000009
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
197260
197346
+
Leu
CAA
[ENA]
¡û
>W1610717955
LLYX01000010
Bacillota
Christensenella hongkongensis [LLYX]
533
619
+
Leu
CAA
[ENA]
¡û
>W1610717970
LLYX01000032
Bacillota
Christensenella hongkongensis [LLYX]
24360
24446
+
Leu
CAA
[ENA]
¡û
>W1610924110
LSZW01000063
Bacillota
Christensenella minuta [LSZW]
19262
19348
+
Leu
CAA
[ENA]
¡û
>W1610925090
LTBA01000029
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
21114
21028
-
Leu
CAA
[ENA]
¡û
>W1610986707
LWGY01000001
Bacillota
Christensenella minuta [LWGY]
490381
490295
-
Leu
CAA
[ENA]
¡û
>W1611052793
MAIQ01000005
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
204710
204796
+
Leu
CAA
[ENA]
¡û
>W1611052810
MAIR01000001
Bacillota
Christensenella minuta [MAIR]
244083
244169
+
Leu
CAA
[ENA]
¡û
>W1710059328
BCMU01000009
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
197260
197346
+
Leu
CAA
[ENA]
¡û
>W1710589422
FRAD01000016
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
2943
3029
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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