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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62483 (9 seq.)
>A171000332
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1400839
1400926
+
Ser
GGA
-
¡û
>A17A000751
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1069228
1069128
-
Ser
GGA
-
¡û
>A17A000801
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
314649
314550
-
Ser
GGA
-
¡û
>A179000323
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1069228
1069130
-
Ser
GGA
-
¡û
>At0332
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
543361
543448
+
Ser
GGA
[Ensembl]
¡û
>WENV170574144
FLYM01008784
[FLYM] hot springs metagenome; Sediment
1655
1740
+
Ser
GGA
[ENA]
¢þ
>W1911075108
NMUE01000001
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
115456
115541
+
Ser
GGA
[ENA]
¡û
>W1911075135
NMUF01000008
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
74886
74971
+
Ser
GGA
[ENA]
¡û
>W1610000623
ABIO01000002
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
259403
259490
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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