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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62580 (41 seq.)
>A171000031
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1029429
1029346
-
Leu
TAG
-
¡û
>A171000760
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
396462
396379
-
Leu
TAG
-
¡û
>A171003745
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2240894
2240810
-
Leu
TAG
-
¡û
>A171004177
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
1941367
1941451
+
Leu
TAG
-
¡û
>A171006990
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
244031
244114
+
Leu
TAG
-
¡û
>A171007224
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
332957
333040
+
Leu
TAG
-
¡û
>A171007440
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1382584
1382668
+
Leu
TAG
-
¡û
>WENV180318166
OBKM01000013
[OBKM] metagenome; water
3183
3266
+
Leu
TAG
[ENA]
¢þ
>WENV180318243
OBKM01000173
[OBKM] metagenome; water
2592
2509
-
Leu
TAG
[ENA]
¢þ
>WENV180318621
OBKM01002954
[OBKM] metagenome; water
1258
1174
-
Leu
TAG
[ENA]
¢þ
>At0828
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1036310
1036227
-
Leu
TAG
[Ensembl]
¡û
>WENV170679915
LFCJ01001478
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
134
51
-
Leu
TAG
[ENA]
¢þ
>WENV170680260
LFCJ01006942
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8080
8163
+
Leu
TAG
[ENA]
¢þ
>WENV170681179
LFFM01000174
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6677
6594
-
Leu
TAG
[ENA]
¢þ
>WENV170681347
LFFM01000539
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
26295
26211
-
Leu
TAG
[ENA]
¢þ
>WENV170681551
LFFM01001346
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
507
424
-
Leu
TAG
[ENA]
¢þ
>W1910006934
BBMP01000026
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
48946
49029
+
Leu
TAG
[ENA]
¡û
>W1910227062
FNIA01000016
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
14594
14678
+
Leu
TAG
[ENA]
¡û
>W1910228484
FNPC01000010
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
66913
66996
+
Leu
TAG
[ENA]
¡û
>W1910228511
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
520460
520376
-
Leu
TAG
[ENA]
¡û
>W1910230022
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
2741402
2741318
-
Leu
TAG
[ENA]
¡û
>W1910230817
FOZK01000003
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
458525
458441
-
Leu
TAG
[ENA]
¡û
>W1911696736
QMIM01000020
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
27842
27926
+
Leu
TAG
[ENA]
¡û
>W1911749415
QWGG01000004
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
421543
421459
-
Leu
TAG
[ENA]
¡û
>W1911824368
QZWE01000038
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
20352
20269
-
Leu
TAG
[ENA]
¡û
>W1610000859
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
1125532
1125449
-
Leu
TAG
[ENA]
¡û
>W1610003280
AFNT02000028
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
14405
14322
-
Leu
TAG
[ENA]
¡û
>W1610004182
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1417113
1417029
-
Leu
TAG
[ENA]
¡û
>W1610005340
AJRK01000405
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
9557
9640
+
Leu
TAG
[ENA]
¡û
>W1610012817
AOIU01000026
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
67776
67692
-
Leu
TAG
[ENA]
¡û
>W1610014503
AOMB01000015
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
24047
23964
-
Leu
TAG
[ENA]
¡û
>W1610014561
AOMC01000152
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
12083
12000
-
Leu
TAG
[ENA]
¡û
>W1610014692
AOMF01000171
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
63479
63562
+
Leu
TAG
[ENA]
¡û
>W1610021329
ATCR02000012
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
72233
72316
+
Leu
TAG
[ENA]
¡û
>W1610061860
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1414206
1414289
+
Leu
TAG
[ENA]
¡û
>W1610085058
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
141479
141563
+
Leu
TAG
[ENA]
¡û
>W1610085123
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1318146
1318062
-
Leu
TAG
[ENA]
¡û
>W1610085162
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1361142
1361058
-
Leu
TAG
[ENA]
¡û
>W1610085201
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
1359952
1359868
-
Leu
TAG
[ENA]
¡û
>W1610085257
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
141571
141655
+
Leu
TAG
[ENA]
¡û
>W1610682536
LKNC01000020
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
507
424
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK