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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65254 (52 seq.)
>W1710815516
LKKJ01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
359811
359897
+
Leu
TAA
[ENA]
¡û
>W1710815633
LKKL01000013
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
47785
47699
-
Leu
TAA
[ENA]
¡û
>W1711353391
MDEM01000033
Gammaproteobacteria
Stutzerimonas xanthomarina [MDEM]
253631
253717
+
Leu
TAA
[ENA]
¡û
>WENV182583027
OJHC01013675
[OJHC] seawater metagenome; Sea water
488
574
+
Leu
TAA
[ENA]
¡û
>W141273238
CCSF01000001
Gammaproteobacteria
Pseudomonas saudiphocaensis 20_BN [CCSF]
186520
186606
+
Leu
TAA
[ENA]
¡û
>WENV170263442
CERC01047904
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
155
241
+
Leu
TAA
[ENA]
¡û
>WENV170264092
CERD01004680
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9271
9185
-
Leu
TAA
[ENA]
¡û
>WENV170357139
CETJ01096924
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16240
16154
-
Leu
TAA
[ENA]
¡û
>C191044742
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
2457582
2457496
-
Leu
TAA
-
¡û
>W141564938
JIBD01000012
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
83858
83944
+
Leu
TAA
[ENA]
¡û
>W1810156392
PJBG01000063
Gammaproteobacteria
Pseudomonas sp. Choline-3u-10 [PJBG]
328638
328724
+
Leu
TAA
[ENA]
¡û
>W1810224452
POUL01000002
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
233388
233474
+
Leu
TAA
[ENA]
¡û
>W1810722116
QNTV01000017
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
98724
98810
+
Leu
TAA
[ENA]
¡û
>W1810743368
QORI01000005
Gammaproteobacteria
Pseudomonas sp. SST3 [QORI]
220084
220170
+
Leu
TAA
[ENA]
¡û
>C151023541
CP007441
Gammaproteobacteria
Stutzerimonas stutzeri 28a24 [CP007441]
2336289
2336375
+
Leu
TAA
[Ensembl]
¡û
>W2010311431
CABWMS010000005
Gammaproteobacteria
Pseudomonas sp. 9Ag [CABWMS]
236654
236568
-
Leu
TAA
[ENA]
¡û
>W2010517449
JAAMQK010000002
Gammaproteobacteria
Pseudomonas stutzeri 8A1 [JAAMQK]
372225
372311
+
Leu
TAA
[ENA]
¡û
>W2010517992
JAAMQT010000002
Gammaproteobacteria
Pseudomonas stutzeri 62A4 [JAAMQT]
74159
74073
-
Leu
TAA
[ENA]
¡û
>W2010518546
JAAMRC010000006
Gammaproteobacteria
Pseudomonas stutzeri 99A1 [JAAMRC]
47393
47479
+
Leu
TAA
[ENA]
¡û
>W2010595971
JABEVZ010000002
Gammaproteobacteria
Pseudomonas nitrititolerans AGROB37 [JABEVZ]
361962
362048
+
Leu
TAA
[ENA]
¡û
>W2010702785
JACHHP010000003
Gammaproteobacteria
Chiayiivirga flava DSM 24163 [JACHHP]
293062
293148
+
Leu
TAA
[ENA]
¡û
>W2010772256
LGLW01000005
Gammaproteobacteria
Pseudomonas sp. Q2-TVG4-2 [LGLW]
152716
152632
-
Leu
TAA
[ENA]
¡û
>W2011416448
RFFL01000003
Gammaproteobacteria
Pseudomonas sp. GL14 [RFFL]
238316
238402
+
Leu
TAA
[ENA]
¡û
>W2011416534
RFFM01000003
Gammaproteobacteria
Pseudomonas zhaodongensis NEAU-ST5-21 [RFFM]
133016
133102
+
Leu
TAA
[ENA]
¡û
>W2011425467
RHQQ01000002
Gammaproteobacteria
Pseudomonas sp. s199 [RHQQ]
125879
125965
+
Leu
TAA
[ENA]
¡û
>W2011425688
RHQU01000001
Gammaproteobacteria
Pseudomonas saudiphocaensis PS_399 [RHQU]
186525
186611
+
Leu
TAA
[ENA]
¡û
>W2011612958
SJSS01000001
Gammaproteobacteria
Pseudomonas sp. IC_126 [SJSS]
1119406
1119320
-
Leu
TAA
[ENA]
¡û
>W2011838333
UGVA01000007
Gammaproteobacteria
Pseudomonas stutzeri NCTC10473 [UGVA]
1944533
1944619
+
Leu
TAA
[ENA]
¡û
>W2012096869
VNHQ01000011
Gammaproteobacteria
Pseudomonas stutzeri NP_8Ht [VNHQ]
450315
450229
-
Leu
TAA
[ENA]
¡û
>W2110305944
JADDOO010000004
Gammaproteobacteria
Pseudomonas saudiphocaensis AGROB56 [JADDOO]
238897
238811
-
Leu
TAA
[ENA]
¡û
>W2110494099
JAFFPG010000001
Gammaproteobacteria
Pseudomonas nitrititolerans PAH26 [JAFFPG]
1409089
1409003
-
Leu
TAA
[ENA]
¡û
>W2110499036
JAFHXU010000004
Gammaproteobacteria
Pseudomonas nitrititolerans Survcare175 [JAFHXU]
164379
164465
+
Leu
TAA
[ENA]
¡û
>W2110567295
JAGQFP010000001
Gammaproteobacteria
Pseudomonas stutzeri A4 [JAGQFP]
581586
581500
-
Leu
TAA
[ENA]
¡û
>C211074934
CP048411
Gammaproteobacteria
Pseudomonas sp. MTM4 [CP048411]
784080
783994
-
Leu
TAA
-
¡û
>C211348496
CP076683
Gammaproteobacteria
Pseudomonas zhaodongensis A252 [CP076683]
3441269
3441355
+
Leu
TAA
-
¡û
>C211357927
CP077641
Gammaproteobacteria
Pseudomonas stutzeri RM2 [CP077641]
3496566
3496480
-
Leu
TAA
-
¡û
>C211394228
CP082271
Gammaproteobacteria
Pseudomonas sp. DNDY-54 [CP082271]
2235973
2236059
+
Leu
TAA
-
¡û
>C231328283
CP093164
Gammaproteobacteria
[Pseudomonas] zhaodongensis LQ01-5 [CP093164]
2661021
2660935
-
Leu
TAA
-
¡û
>C231367549
CP096208
Gammaproteobacteria
Pseudomonas knackmussii B09-2 [CP096208]
2253254
2253340
+
Leu
TAA
-
¡û
>C231547248
CP113226
Gammaproteobacteria
Pseudomonadaceae bacterium T75 [CP113226]
715036
714950
-
Leu
TAA
-
¡û
>W2110782141
WIGA01000009
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.20.3 [WIGA]
391827
391741
-
Leu
TAA
[ENA]
¡û
>W2110782178
WIGB01000002
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.20.2 [WIGB]
2312896
2312982
+
Leu
TAA
[ENA]
¡û
>W2110782513
WIGK01000005
Gammaproteobacteria
Pseudomonas xanthomarina KOL14.W.430.4 [WIGK]
78157
78071
-
Leu
TAA
[ENA]
¡û
>W1511489994
JWTL01000001
Gammaproteobacteria
Pseudomonas sp. 10B238 [JWTL]
365675
365589
-
Leu
TAA
[ENA]
¡û
>C121015374
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
2211991
2211905
-
Leu
TAA
[Ensembl]
¡û
>C161000943
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
2687331
2687417
+
Leu
TAA
-
¡û
>C161090012
CP015641
Gammaproteobacteria
Stutzerimonas stutzeri 273 [CP015641]
4261944
4261858
-
Leu
TAA
[Ensembl]
¡û
>W121018201
AGSX01000004
Gammaproteobacteria
Stutzerimonas stutzeri SDM-LAC [AGSX]
85971
86057
+
Leu
TAA
[ENA]
¡û
>W1610679613
LKKJ01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
359811
359897
+
Leu
TAA
[ENA]
¡û
>W1610679730
LKKL01000013
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
47785
47699
-
Leu
TAA
[ENA]
¡û
>W1710560317
FONH01000002
Gammaproteobacteria
Dyella marensis [FONH]
374808
374722
-
Leu
TAA
[ENA]
¡û
>W1710586221
FQXA01000002
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
439025
439111
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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