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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65274 (112 seq.)
>W1711135247
LUYS01000104
Bacteroidota
Bacteroidales bacterium Bact_01 [LUYS]
2827
2913
+
Leu
GAG
[ENA]
¡û
>W1711135371
LUYV01000022
Bacteroidota
Bacteroidales bacterium Bact_04 [LUYV]
32661
32575
-
Leu
GAG
[ENA]
¡û
>W1711392497
MENQ01000007
Bacteroidota
Bacteroidetes bacterium GWC2_46_850 [MENQ]
148747
148663
-
Leu
GAG
[ENA]
¡û
>W1711392648
MENT01000027
Bacteroidota
Bacteroidetes bacterium GWD2_45_23 [MENT]
17557
17473
-
Leu
GAG
[ENA]
¡û
>W1711502747
MKSZ01000047
Bacteroidota
Bacteroidales bacterium 36-12 [MKSZ]
41306
41392
+
Leu
GAG
[ENA]
¡û
>W1711502895
MKTD01000003
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
56542
56628
+
Leu
GAG
[ENA]
¡û
>W1711502986
MKTE01000095
Bacteroidota
Bacteroidia bacterium 44-10 [MKTE]
20229
20145
-
Leu
GAG
[ENA]
¡û
>W1711505696
MKVT01000014
Bacteroidota
Paludibacter sp. 47-17 [MKVT]
30875
30789
-
Leu
GAG
[ENA]
¡û
>W1711629360
MPOV01000133
Bacteroidota
Proteiniphilum sp. EBM-39 [MPOV]
10131
10047
-
Leu
GAG
[ENA]
¡û
>W1711629426
MPOX01000029
Bacteroidota
Proteiniphilum sp. EBM-41 [MPOX]
82906
82990
+
Leu
GAG
[ENA]
¡û
>C171129207
LT605205
Bacteroidota
Proteiniphilum saccharofermentans M3/6 [LT605205]
2647323
2647237
-
Leu
GAG
-
¡û
>C171129296
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
1970676
1970762
+
Leu
GAG
-
¡û
>W131177711
ARKZ01000035
Bacteroidota
Proteiniphilum acetatigenes DSM 18083 [ARKZ]
262030
262114
+
Leu
GAG
[ENA]
¡û
>WENV180296712
OBJA01001932
[OBJA] soil metagenome; sediment, water from around vicinity
8992
8908
-
Leu
GAG
[ENA]
¡û
>WENV180473541
OBYR01000395
[OBYR] human gut metagenome; faeces
2798
2714
-
Leu
GAG
[ENA]
¡û
>WENV180721563
ODGL01002114
[ODGL] human metagenome; G_DNA_Subgingival plaque
2265
2349
+
Leu
GAG
[ENA]
¡û
>WENV180726480
ODGU01000037
[ODGU] human metagenome; G_DNA_Supragingival plaque
68465
68381
-
Leu
GAG
[ENA]
¡û
>WENV180731377
ODGW01000236
[ODGW] human metagenome; G_DNA_Supragingival plaque
20232
20316
+
Leu
GAG
[ENA]
¡û
>WENV180734454
ODGZ01008910
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2928
2844
-
Leu
GAG
[ENA]
¡û
>WENV180749768
ODHS01000009
[ODHS] human metagenome; G_DNA_Supragingival plaque
112399
112315
-
Leu
GAG
[ENA]
¡û
>WENV180787930
ODIS01021923
[ODIS] human metagenome; G_DNA_Supragingival plaque
1435
1351
-
Leu
GAG
[ENA]
¡û
>WENV180795903
ODJB01000543
[ODJB] human metagenome; G_DNA_Supragingival plaque
23628
23544
-
Leu
GAG
[ENA]
¡û
>WENV180804448
ODJG01002978
[ODJG] human metagenome; G_DNA_Supragingival plaque
634
550
-
Leu
GAG
[ENA]
¡û
>WENV180809038
ODJK01003271
[ODJK] human metagenome; G_DNA_Subgingival plaque
203
287
+
Leu
GAG
[ENA]
¡û
>WENV180824945
ODJX01115212
[ODJX] human metagenome; G_DNA_Supragingival plaque
148
64
-
Leu
GAG
[ENA]
¡û
>WENV180844055
ODKN01029170
[ODKN] human metagenome; G_DNA_Supragingival plaque
1039
1123
+
Leu
GAG
[ENA]
¡û
>WENV180845502
ODKT01000610
[ODKT] human metagenome; G_DNA_Supragingival plaque
167
251
+
Leu
GAG
[ENA]
¡û
>WENV180874088
ODLP01145633
[ODLP] human metagenome; G_DNA_Tongue dorsum
97
13
-
Leu
GAG
[ENA]
¡û
>WENV180925399
ODTK01134794
[ODTK] human metagenome; G_DNA_Supragingival plaque
21
105
+
Leu
GAG
[ENA]
¡û
>WENV180940017
ODTX01179089
[ODTX] human metagenome; G_DNA_Supragingival plaque
85
1
-
Leu
GAG
[ENA]
¡û
>WENV180943440
ODUC01000512
[ODUC] human metagenome; G_DNA_Supragingival plaque
6059
6143
+
Leu
GAG
[ENA]
¡û
>WENV180943730
ODUC01002092
[ODUC] human metagenome; G_DNA_Supragingival plaque
5943
6027
+
Leu
GAG
[ENA]
¡û
>WENV180980640
ODVE01000870
[ODVE] human metagenome; G_DNA_Supragingival plaque
8469
8553
+
Leu
GAG
[ENA]
¡û
>WENV180999163
ODVT01007409
[ODVT] human metagenome; G_DNA_Buccal mucosa
1263
1179
-
Leu
GAG
[ENA]
¡û
>WENV181003936
ODVX01055747
[ODVX] human metagenome; G_DNA_Supragingival plaque
29
113
+
Leu
GAG
[ENA]
¡û
>WENV181007419
ODWE01000076
[ODWE] human metagenome; G_DNA_Supragingival plaque
27705
27789
+
Leu
GAG
[ENA]
¡û
>WENV181043131
ODXU01049044
[ODXU] human metagenome; G_DNA_Buccal mucosa
377
461
+
Leu
GAG
[ENA]
¡û
>WENV181063440
ODYP01000796
[ODYP] human metagenome; G_DNA_Supragingival plaque
17285
17201
-
Leu
GAG
[ENA]
¡û
>WENV181067516
ODZI01023039
[ODZI] human metagenome; G_DNA_Supragingival plaque
76
160
+
Leu
GAG
[ENA]
¡û
>WENV181075503
OEAP01000017
[OEAP] human metagenome; G_DNA_Supragingival plaque
37380
37464
+
Leu
GAG
[ENA]
¡û
>WENV181079283
OEAS01004121
[OEAS] human metagenome; G_DNA_Supragingival plaque
7424
7508
+
Leu
GAG
[ENA]
¡û
>WENV181083090
OEAV01002332
[OEAV] human metagenome; G_DNA_Supragingival plaque
5544
5460
-
Leu
GAG
[ENA]
¡û
>WENV181092162
OEBC01290892
[OEBC] human metagenome; G_DNA_Supragingival plaque
163
247
+
Leu
GAG
[ENA]
¡û
>WENV181145733
OEHQ01000035
[OEHQ] human metagenome; G_DNA_Supragingival plaque
42900
42984
+
Leu
GAG
[ENA]
¡û
>WENV181178478
OEJT01000023
[OEJT] human metagenome; G_DNA_Supragingival plaque
44486
44570
+
Leu
GAG
[ENA]
¡û
>WENV181181952
OEJV01000876
[OEJV] human metagenome; G_DNA_Supragingival plaque
1599
1515
-
Leu
GAG
[ENA]
¡û
>WENV181230837
OFEK01004063
[OFEK] activated sludge metagenome; Anaerobic digester
813
897
+
Leu
GAG
[ENA]
¡û
>WENV181478586
OGFF01094331
[OGFF] metagenome; Human gut stool
37
123
+
Leu
GAG
[ENA]
¡û
>WENV181693167
OGPA01003876
[OGPA] human gut metagenome; faeces
8847
8761
-
Leu
GAG
[ENA]
¡û
>WENV181824794
OGUK01010895
[OGUK] human gut metagenome; faeces
2442
2358
-
Leu
GAG
[ENA]
¡û
>W141227002
BAKR01000004
Bacteroidota
Porphyromonas cangingivalis JCM 15983 [BAKR]
90775
90689
-
Leu
GAG
[ENA]
¡û
>WENV170004136
AGTN01573480
[AGTN] bioreactor metagenome; poplar biomass
12954
12868
-
Leu
GAG
[ENA]
¡û
>WENV170007195
AMWB02094236
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
734
648
-
Leu
GAG
[ENA]
¡û
>WENV170561337
CZCA01006527
[CZCA] anaerobic digester metagenome; anaerobic digester
878
794
-
Leu
GAG
[ENA]
¡û
>WENV170561877
CZCB01000282
[CZCB] anaerobic digester metagenome; anaerobic digester
198
114
-
Leu
GAG
[ENA]
¡û
>WENV170563020
CZCB01008917
[CZCB] anaerobic digester metagenome; anaerobic digester
1109
1193
+
Leu
GAG
[ENA]
¡û
>WENV170643732
JMBV01000294
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
5353
5437
+
Leu
GAG
[ENA]
¡û
>WENV170644653
JMBW01049153
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
267
183
-
Leu
GAG
[ENA]
¡û
>WENV170644930
JMBX01000279
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
10435
10519
+
Leu
GAG
[ENA]
¡û
>WENV170656288
JTFO01008877
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
656
740
+
Leu
GAG
[ENA]
¡û
>WENV170656619
JTFO01028789
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
283
199
-
Leu
GAG
[ENA]
¡û
>WENV170657376
JTFO01137520
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
883
797
-
Leu
GAG
[ENA]
¡û
>WENV170678250
LDZT01012676
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4377
4293
-
Leu
GAG
[ENA]
¡û
>WENV170683688
LFRM01000276
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
524
440
-
Leu
GAG
[ENA]
¡û
>WENV170686563
LFRM01151091
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6959
7043
+
Leu
GAG
[ENA]
¡û
>WENV170708203
LNAP01058391
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
499
413
-
Leu
GAG
[ENA]
¡û
>WENV170717733
LSQX01047569
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2583
2499
-
Leu
GAG
[ENA]
¡û
>WENV170717965
LSQX01055883
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
228
312
+
Leu
GAG
[ENA]
¡û
>WENV170720698
LSQX01162685
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1435
1521
+
Leu
GAG
[ENA]
¡û
>WENV170721738
LSQX01202269
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
66306
66222
-
Leu
GAG
[ENA]
¡û
>WENV170723915
LSQX01285365
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6365
6281
-
Leu
GAG
[ENA]
¡û
>WENV170724297
LSQX01300152
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
692
776
+
Leu
GAG
[ENA]
¡û
>WENV170726954
LSQX01399846
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
72
158
+
Leu
GAG
[ENA]
¡û
>WENV170966981
MTKW01000052
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
560530
560616
+
Leu
GAG
[ENA]
¡û
>WENV170967005
MTKW01000079
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7586
7670
+
Leu
GAG
[ENA]
¡û
>WENV170967458
MTKW01001439
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
35774
35858
+
Leu
GAG
[ENA]
¡û
>WENV170969692
MTKW01036992
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
395
481
+
Leu
GAG
[ENA]
¡û
>WENV170970480
MTKW01072622
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1415
1329
-
Leu
GAG
[ENA]
¡û
>C181004301
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
1965862
1965946
+
Leu
GAG
-
¡û
>C191213142
LR134506
Bacteroidota
Porphyromonas cangingivalis NCTC12856 [LR134506]
298949
298865
-
Leu
GAG
-
¡û
>W1810192598
PKMK01000001
Bacteroidota
Dysgonamonadaceae bacterium XHS2771 [PKMK]
70114
70198
+
Leu
GAG
[ENA]
¡û
>W1810797621
QRMP01000001
Bacteroidota
Parabacteroides sp. AM08-6 [QRMP]
406891
406807
-
Leu
GAG
[ENA]
¡û
>W1810881225
QUKD01000001
Bacteroidota
Parabacteroides sp. TM07-1AC [QUKD]
638689
638605
-
Leu
GAG
[ENA]
¡û
>C151102948
LN515532
Bacteroidota
Fermentimonas caenicola [LN515532]
860127
860211
+
Leu
GAG
[Ensembl]
¡û
>W2010259198
CABJEG020000001
Bacteroidota
Bacteroidales bacterium [CABJEG]
406891
406807
-
Leu
GAG
[ENA]
¡û
>W2010273141
CABKUN020000002
Bacteroidota
Porphyromonadaceae bacterium [CABKUN]
170003
169919
-
Leu
GAG
[ENA]
¡û
>W2010292192
CABOGY010000001
Bacteroidota
Bacteroidales bacterium [CABOGY]
638689
638605
-
Leu
GAG
[ENA]
¡û
>W2011411539
RDSD01000024
Bacteroidota
Proteiniphilum sp. X52 [RDSD]
61276
61192
-
Leu
GAG
[ENA]
¡û
>W2011496117
RXHR01000012
Bacteroidota
Porphyromonadaceae bacterium SYSU GA16107 [RXHR]
15695
15611
-
Leu
GAG
[ENA]
¡û
>W2011496160
RXHS01000012
Bacteroidota
Porphyromonadaceae bacterium SYSU GA16112 [RXHS]
15695
15611
-
Leu
GAG
[ENA]
¡û
>W2011761903
UATO01000009
Bacteroidota
Porphyromonas cangingivalis NCTC12857 [UATO]
249248
249164
-
Leu
GAG
[ENA]
¡û
>W2011956200
UYXJ01000001
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [UYXJ]
5181957
5181871
-
Leu
GAG
[ENA]
¡û
>W2110347605
JADNBB010000003
Bacteroidota
Parabacteroides goldsteinii 1001217B_150727_C5 [JADNBB]
186818
186732
-
Leu
GAG
[ENA]
¡û
>C211273672
CP070276
Bacteroidota
Dysgonomonadaceae bacterium zrk40 [CP070276]
384842
384758
-
Leu
GAG
-
¡û
>W10110926
ADCM01000009
Bacteroidota
Bacteroidetes oral taxon 274 taxon 274 str. F0058 [ADCM]
126850
126766
-
Leu
GAG
[ENA]
¡û
>C231131274
CP073586
Bacteroidota
Proteiniphilum propionicum JNU-WLY501 [CP073586]
3460069
3459985
-
Leu
GAG
-
¡û
>W1510562715
CTEJ01000002
Bacteroidota
Lascolabacillus massiliensis SIT8 [CTEJ]
170003
169919
-
Leu
GAG
[ENA]
¡û
>W11113427
ADCM01000009
Bacteroidota
Bacteroidetes oral taxon 274 taxon 274 str. F0058 [ADCM]
126850
126766
-
Leu
GAG
[ENA]
¡û
>W1511328320
JQJD01000040
Bacteroidota
Porphyromonas cangingivalis COT-109 OH1386 [JQJD]
4719
4633
-
Leu
GAG
[ENA]
¡û
>W1511328401
JQJF01000008
Bacteroidota
Porphyromonas cangingivalis COT-109 OH1379 [JQJF]
36651
36565
-
Leu
GAG
[ENA]
¡û
>W1511336723
JRAN01000060
Bacteroidota
Porphyromonadaceae bacterium COT-184 OH4590 [JRAN]
24508
24422
-
Leu
GAG
[ENA]
¡û
>W1610081964
BDEJ01000087
Bacteroidota
Porphyromonadaceae bacterium H1 [BDEJ]
10516
10602
+
Leu
GAG
[ENA]
¡û
>W1610082004
BDEK01000101
Bacteroidota
Porphyromonadaceae bacterium H1 [BDEK]
8409
8323
-
Leu
GAG
[ENA]
¡û
>W1610946367
LUYS01000104
Bacteroidota
Bacteroidales bacterium Bact_01 [LUYS]
2827
2913
+
Leu
GAG
[ENA]
¡û
>W1610946491
LUYV01000022
Bacteroidota
Bacteroidales bacterium Bact_04 [LUYV]
32661
32575
-
Leu
GAG
[ENA]
¡û
>W1710080737
BDEJ01000087
Bacteroidota
Porphyromonadaceae bacterium H1 [BDEJ]
10516
10602
+
Leu
GAG
[ENA]
¡û
>W1710080777
BDEK01000101
Bacteroidota
Porphyromonadaceae bacterium H1 [BDEK]
8409
8323
-
Leu
GAG
[ENA]
¡û
>W1710533110
FNQW01000012
Bacteroidota
Porphyromonadaceae bacterium KH3R12 [FNQW]
52263
52177
-
Leu
GAG
[ENA]
¡û
>W1710567490
FOSU01000002
Bacteroidota
Porphyromonadaceae bacterium KH3CP3RA [FOSU]
275176
275260
+
Leu
GAG
[ENA]
¡û
>W1710576027
FOZR01000022
Bacteroidota
Porphyromonadaceae bacterium NLAE-zl-C104 [FOZR]
41399
41315
-
Leu
GAG
[ENA]
¡û
>W1710578583
FPBR01000074
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
3894
3808
-
Leu
GAG
[ENA]
¡û
>W1710600445
FUWL01000007
Bacteroidota
Porphyromonas cangingivalis [FUWL]
91122
91036
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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