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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653747 (13 seq.)
>C171037557
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
2393481
2393409
-
Arg
CCG
-
¡û
>C171104424
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
590461
590533
+
Arg
CCG
-
¡û
>W131169889
ARFC01000002
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
281788
281714
-
Arg
CCG
[ENA]
¡û
>W131169946
ARFD01000098
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
20435
20363
-
Arg
CCG
[ENA]
¡û
>C181113142
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
3860565
3860493
-
Arg
CCG
-
¡û
>W09109931
ABUR01000018
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
135676
135602
-
Arg
CCG
[ENA]
¡û
>W1911497292
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
361681
361609
-
Arg
CCG
[ENA]
¡û
>W1810364379
PVTE01000012
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
120890
120962
+
Arg
CCG
[ENA]
¡û
>W1810692102
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4846160
4846088
-
Arg
CCG
[ENA]
¡û
>SRA1016311
SRR023846.444410
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
155
+
Arg
CCG
[SRA]
>C151068613
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6163841
6163915
+
Arg
CCG
[Ensembl]
¡û
>C10111779
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7114722
7114648
-
Arg
CCG
[Ensembl]
¡û
>W1710558192
FOLQ01000005
Bacteroidota
Spirosoma endophyticum [FOLQ]
111792
111866
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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