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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655031 (79 seq.)
>W1710872673
LMME01000001
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
222589
222663
+
Val
CAC
[ENA]
¡û
>W1710872762
LMMG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
234286
234360
+
Val
CAC
[ENA]
¡û
>W1710872972
LMMK01000024
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
30899
30973
+
Val
CAC
[ENA]
¡û
>W1710873011
LMML01000028
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
570060
570134
+
Val
CAC
[ENA]
¡û
>W1710873089
LMMN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
23361
23287
-
Val
CAC
[ENA]
¡û
>W1710873197
LMMP01000045
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
98830
98904
+
Val
CAC
[ENA]
¡û
>W1710873233
LMMQ01000019
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
33133
33059
-
Val
CAC
[ENA]
¡û
>W1710873363
LMMS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
197173
197099
-
Val
CAC
[ENA]
¡û
>W1710873796
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
285489
285563
+
Val
CAC
[ENA]
¡û
>W1710873902
LMND01000034
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
68198
68272
+
Val
CAC
[ENA]
¡û
>W1710873908
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
911692
911618
-
Val
CAC
[ENA]
¡û
>W1710874144
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
146553
146479
-
Val
CAC
[ENA]
¡û
>W1710874265
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
294129
294055
-
Val
CAC
[ENA]
¡û
>W1710874369
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
153184
153110
-
Val
CAC
[ENA]
¡û
>W1710874426
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
286624
286550
-
Val
CAC
[ENA]
¡û
>W1710874474
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
101344
101270
-
Val
CAC
[ENA]
¡û
>W1710874585
LMNS01000037
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
119438
119512
+
Val
CAC
[ENA]
¡û
>W1710874635
LMNU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
748186
748260
+
Val
CAC
[ENA]
¡û
>W1710877816
LMQK01000035
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
68179
68253
+
Val
CAC
[ENA]
¡û
>W1710878308
LMQV01000040
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
281564
281638
+
Val
CAC
[ENA]
¡û
>W1710878538
LMRA01000023
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
98286
98360
+
Val
CAC
[ENA]
¡û
>W1710878647
LMRC01000036
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
99292
99218
-
Val
CAC
[ENA]
¡û
>W1710879185
LMRM01000012
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
32669
32743
+
Val
CAC
[ENA]
¡û
>W1711078679
LSNC01000044
Alphaproteobacteria
Methylorubrum populi [LSNC]
76771
76845
+
Val
CAC
[ENA]
¡û
>W1711571738
MNAO01000021
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
13471
13397
-
Val
CAC
[ENA]
¡û
>W131051709
AMXU01000003
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
42706
42780
+
Val
CAC
[ENA]
¡û
>W131159764
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
3830922
3830848
-
Val
CAC
[ENA]
¡û
>W131166781
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
2800547
2800473
-
Val
CAC
[ENA]
¡û
>C171092142
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1265579
1265653
+
Val
CAC
-
¡û
>C171115223
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1840476
1840402
-
Val
CAC
-
¡û
>W08002393
ABEX01000004
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
143097
143171
+
Val
CAC
[ENA]
¡û
>C08006531
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
319579
319508
-
Val
CAC
[Ensembl]
¡û
>W141277759
JAEV01000005
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
260604
260678
+
Val
CAC
[ENA]
¡û
>C08006679
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
382447
382376
-
Val
CAC
[Ensembl]
¡û
>WENV170577917
FSSH01002949
[FSSH] freshwater metagenome; drinking water
26689
26615
-
Val
CAC
[ENA]
¢þ
>W09106857
ABEC01000005
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
228869
228795
-
Val
CAC
[ENA]
¡û
>W09107168
ABFR01000001
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
17178
17104
-
Val
CAC
[ENA]
¡û
>C181000392
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
364540
364466
-
Val
CAC
-
¡û
>C181175679
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
267817
267743
-
Val
CAC
-
¡û
>C181179970
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
770561
770635
+
Val
CAC
-
¡û
>C181227830
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
47466
47540
+
Val
CAC
-
¡û
>C09107460
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
308301
308227
-
Val
CAC
[Ensembl]
¡û
>C09107547
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
157295
157221
-
Val
CAC
[Ensembl]
¡û
>C09107648
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
185888
185814
-
Val
CAC
[Ensembl]
¡û
>W1810057183
PDHT01000001
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
320729
320803
+
Val
CAC
[ENA]
¡û
>W1810658551
QJJJ01000013
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
40969
40895
-
Val
CAC
[ENA]
¡û
>SRA1015244
SRR023845.517270
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
242
+
Val
CAC
[SRA]
>SRA1016071
SRR023846.337316
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
75
1
-
Val
CAC
[SRA]
>C161005007
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
173827
173753
-
Val
CAC
[Ensembl]
¡û
>W1610042947
BAZM01000034
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
2764
2838
+
Val
CAC
[ENA]
¡û
>W1610043159
BAZP01000010
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
8553
8627
+
Val
CAC
[ENA]
¡û
>W121010658
AGJK01000012
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
28896
28822
-
Val
CAC
[ENA]
¡û
>W1610735019
LMME01000001
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
222589
222663
+
Val
CAC
[ENA]
¡û
>W1610735108
LMMG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
234286
234360
+
Val
CAC
[ENA]
¡û
>W1610735318
LMMK01000024
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
30899
30973
+
Val
CAC
[ENA]
¡û
>W1610735357
LMML01000028
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
570060
570134
+
Val
CAC
[ENA]
¡û
>W1610735435
LMMN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
23361
23287
-
Val
CAC
[ENA]
¡û
>W1610735543
LMMP01000045
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
98830
98904
+
Val
CAC
[ENA]
¡û
>W1610735579
LMMQ01000019
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
33133
33059
-
Val
CAC
[ENA]
¡û
>W1610735709
LMMS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
197173
197099
-
Val
CAC
[ENA]
¡û
>W1610736142
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
285489
285563
+
Val
CAC
[ENA]
¡û
>W1610736248
LMND01000034
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
68198
68272
+
Val
CAC
[ENA]
¡û
>W1610736254
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
911692
911618
-
Val
CAC
[ENA]
¡û
>W1610736490
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
146553
146479
-
Val
CAC
[ENA]
¡û
>W1610736611
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
294129
294055
-
Val
CAC
[ENA]
¡û
>W1610736715
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
153184
153110
-
Val
CAC
[ENA]
¡û
>W1610736772
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
286624
286550
-
Val
CAC
[ENA]
¡û
>W1610736820
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
101344
101270
-
Val
CAC
[ENA]
¡û
>W1610736931
LMNS01000037
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
119438
119512
+
Val
CAC
[ENA]
¡û
>W1610736981
LMNU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
748186
748260
+
Val
CAC
[ENA]
¡û
>W1610740162
LMQK01000035
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
68179
68253
+
Val
CAC
[ENA]
¡û
>W1610740654
LMQV01000040
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
281564
281638
+
Val
CAC
[ENA]
¡û
>W1610740884
LMRA01000023
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
98286
98360
+
Val
CAC
[ENA]
¡û
>W1610740993
LMRC01000036
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
99292
99218
-
Val
CAC
[ENA]
¡û
>W1610741531
LMRM01000012
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
32669
32743
+
Val
CAC
[ENA]
¡û
>W1610917589
LSNC01000044
Alphaproteobacteria
Methylorubrum populi [LSNC]
76771
76845
+
Val
CAC
[ENA]
¡û
>W1710040107
BAZM01000034
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
2764
2838
+
Val
CAC
[ENA]
¡û
>W1710040319
BAZP01000010
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
8553
8627
+
Val
CAC
[ENA]
¡û
>W1710567544
FOSV01000008
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
24966
24892
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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