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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656046 (33 seq.)
>W131180775
ARNJ01000065
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
112361
112289
-
Thr
GGT
[ENA]
¡û
>W131215960
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
460781
460853
+
Thr
GGT
[ENA]
¡û
>W1711377558
MDZA01000222
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
53897
53969
+
Thr
GGT
[ENA]
¡û
>W1711377599
MDZB01000098
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
61842
61914
+
Thr
GGT
[ENA]
¡û
>W1711377652
MDZC01000090
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
129653
129581
-
Thr
GGT
[ENA]
¡û
>W1712105562
NIRR01000001
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
94051
93979
-
Thr
GGT
[ENA]
¡û
>WENV170998643
MWWJ01067556
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
194
266
+
Thr
GGT
[ENA]
¢þ
>C181175109
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2893398
2893326
-
Thr
GGT
-
¡û
>C191154871
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
650779
650851
+
Thr
GGT
-
¡û
>W141734736
JNLX01000184
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
76415
76487
+
Thr
GGT
[ENA]
¡û
>W1910547389
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
669168
669096
-
Thr
GGT
[ENA]
¡û
>W1910651892
LYMU01000059
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
172735
172807
+
Thr
GGT
[ENA]
¡û
>W1911788133
QYCN01000001
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
141380
141308
-
Thr
GGT
[ENA]
¡û
>W1810089893
PGFA01000002
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
312058
312130
+
Thr
GGT
[ENA]
¡û
>W1810678952
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
865128
865200
+
Thr
GGT
[ENA]
¡û
>W1810912364
QVLT01000001
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
110803
110731
-
Thr
GGT
[ENA]
¡û
>SRA1015776
SRR023846.194360
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
127
199
+
Thr
GGT
[SRA]
>C151009414
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2647667
2647739
+
Thr
GGT
[Ensembl]
¡û
>C151017374
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4070378
4070306
-
Thr
GGT
[Ensembl]
¡û
>C151064001
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3640610
3640538
-
Thr
GGT
[Ensembl]
¡û
>C151096194
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
198817
198889
+
Thr
GGT
-
¡û
>W1511543315
JZIR01000059
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
42879
42951
+
Thr
GGT
[ENA]
¡û
>W1511582952
LATM01000012
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
20435
20363
-
Thr
GGT
[ENA]
¡û
>C161061546
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
1906741
1906813
+
Thr
GGT
[Ensembl]
¡û
>C161070735
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4150480
4150408
-
Thr
GGT
[Ensembl]
¡û
>C161077113
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
3761948
3762020
+
Thr
GGT
[Ensembl]
¡û
>W1710530554
FNOV01000003
Bacteroidota
Hymenobacter psychrophilus [FNOV]
177988
177916
-
Thr
GGT
[ENA]
¡û
>W1710553562
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
566994
567066
+
Thr
GGT
[ENA]
¡û
>W1710573749
FOXS01000005
Bacteroidota
Hymenobacter arizonensis [FOXS]
88804
88876
+
Thr
GGT
[ENA]
¡û
>W1710587458
FQYN01000002
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
584799
584727
-
Thr
GGT
[ENA]
¡û
>W1710590098
FRAS01000002
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
90319
90391
+
Thr
GGT
[ENA]
¡û
>W1710605419
FWWW01000071
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
5341
5415
+
Thr
GGT
[ENA]
¡û
>W1710610177
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
668899
668827
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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