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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656379 (61 seq.)
>W1711092532
LTEE01000045
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
1120
1194
+
Val
CAC
[ENA]
¡û
>W1711093866
LTFJ01000016
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
107451
107525
+
Val
CAC
[ENA]
¡û
>W1711095131
LTGN01000033
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
80941
80867
-
Val
CAC
[ENA]
¡û
>W1711096277
LTHP01000112
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
31480
31406
-
Val
CAC
[ENA]
¡û
>W1711096335
LTHQ01000040
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
12999
12925
-
Val
CAC
[ENA]
¡û
>W1711096981
LTIG01000028
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
260766
260692
-
Val
CAC
[ENA]
¡û
>W1711097566
LTIU01000048
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
1116
1190
+
Val
CAC
[ENA]
¡û
>W1711098037
LTJF01000021
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
254751
254677
-
Val
CAC
[ENA]
¡û
>W1711098553
LTJR01000008
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
234116
234042
-
Val
CAC
[ENA]
¡û
>W1711099063
LTKD01000032
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
84995
84921
-
Val
CAC
[ENA]
¡û
>W1711099366
LTKK01000047
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
391
465
+
Val
CAC
[ENA]
¡û
>W1711102342
LTNQ01000038
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
106114
106188
+
Val
CAC
[ENA]
¡û
>W1711102378
LTNR01000045
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
89758
89684
-
Val
CAC
[ENA]
¡û
>W1711102405
LTNS01000007
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
1115
1189
+
Val
CAC
[ENA]
¡û
>W1711102484
LTNT01000028
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
640
714
+
Val
CAC
[ENA]
¡û
>W1711102535
LTNU01000057
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
1115
1189
+
Val
CAC
[ENA]
¡û
>W1711102592
LTNV01000055
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
23010
22936
-
Val
CAC
[ENA]
¡û
>W1711103272
LTOO01000011
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
182723
182649
-
Val
CAC
[ENA]
¡û
>W1711103443
LTOS01000027
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
38084
38158
+
Val
CAC
[ENA]
¡û
>W1711107020
LTSJ01000038
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
1098
1172
+
Val
CAC
[ENA]
¡û
>W1711110060
LTVE01000042
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
1116
1190
+
Val
CAC
[ENA]
¡û
>W1711112775
LTXS01000011
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
115749
115823
+
Val
CAC
[ENA]
¡û
>W1711113421
LTYH01000014
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
256126
256052
-
Val
CAC
[ENA]
¡û
>W1711114864
LTZQ01000038
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
87248
87322
+
Val
CAC
[ENA]
¡û
>W1711114932
LTZS01000022
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
38030
38104
+
Val
CAC
[ENA]
¡û
>W1711186827
LWON01000026
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
649
723
+
Val
CAC
[ENA]
¡û
>W1711187891
LWPW01000060
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
19513
19439
-
Val
CAC
[ENA]
¡û
>W1711427587
MIFV01000001
Actinomycetota
Corynebacterium amycolatum [MIFV]
85169
85095
-
Val
CAC
[ENA]
¡û
>W1711507502
MKXS01000012
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
715
789
+
Val
CAC
[ENA]
¡û
>W1711724002
MTPT01000002
Actinomycetota
Corynebacterium amycolatum [MTPT]
89431
89357
-
Val
CAC
[ENA]
¡û
>W131000463
AGEM01000012
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
327397
327471
+
Val
CAC
[ENA]
¡û
>WENV180554253
OCJN01000034
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
895
969
+
Val
CAC
[ENA]
¢þ
>WENV181326386
OFLL01000239
[OFLL] metagenome; faeces
15084
15158
+
Val
CAC
[ENA]
¢þ
>WENV182629014
OJKR01001150
[OJKR] metagenome; surface
4555
4481
-
Val
CAC
[ENA]
¢þ
>WENV182636113
OJKZ01000348
[OJKZ] metagenome; surface
17234
17308
+
Val
CAC
[ENA]
¢þ
>WENV182640380
OJLB01005916
[OJLB] metagenome; surface
1209
1135
-
Val
CAC
[ENA]
¢þ
>WENV182643523
OJLW01000010
[OJLW] metagenome; surface
429
503
+
Val
CAC
[ENA]
¢þ
>WENV182644773
OJLY01000332
[OJLY] metagenome; surface
27798
27724
-
Val
CAC
[ENA]
¢þ
>WENV182645765
OJLZ01002122
[OJLZ] metagenome; surface
430
504
+
Val
CAC
[ENA]
¢þ
>WENV182646240
OJMA01000546
[OJMA] metagenome; surface
2636
2710
+
Val
CAC
[ENA]
¢þ
>WENV182837603
OKGJ01001049
[OKGJ] human gut metagenome; human gut
1794
1720
-
Val
CAC
[ENA]
¢þ
>WENV170717102
LSQX01024543
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1168
1094
-
Val
CAC
[ENA]
¢þ
>W09114655
ABZU01000014
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
616
690
+
Val
CAC
[ENA]
¡û
>C181056533
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
494764
494838
+
Val
CAC
-
¡û
>C191111899
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
1267243
1267317
+
Val
CAC
-
¡û
>W1910183469
BJNT01000011
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
550
622
+
Val
CAC
[ENA]
¡û
>W1810187615
PKHS01000004
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
262215
262141
-
Val
CAC
[ENA]
¡û
>W1810187644
PKHT01000001
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
136302
136228
-
Val
CAC
[ENA]
¡û
>C151039873
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
2389096
2389170
+
Val
CAC
[Ensembl]
¡û
>W10124071
AEAU01000070
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
85240
85168
-
Val
CAC
[ENA]
¡û
>C11106664
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
1790876
1790948
+
Val
CAC
[Ensembl]
¡û
>W1511442759
JUSD01000009
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
422
496
+
Val
CAC
[ENA]
¡û
>W1511457804
JVIP01000027
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
401
475
+
Val
CAC
[ENA]
¡û
>W1511463628
JVOW01000035
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
90606
90532
-
Val
CAC
[ENA]
¡û
>W1511464327
JVPT01000072
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
136217
136143
-
Val
CAC
[ENA]
¡û
>W1511469449
JVVM01000006
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
396
470
+
Val
CAC
[ENA]
¡û
>W11130908
AEAU01000070
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
85240
85168
-
Val
CAC
[ENA]
¡û
>W1511476402
JWEP01000006
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
22819
22745
-
Val
CAC
[ENA]
¡û
>W1610163626
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149008
148936
-
Val
CAC
[ENA]
¡û
>C131005330
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1447049
1447123
+
Val
CAC
[Ensembl]
¡û
>W1710165293
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149008
148936
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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