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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660442 (53 seq.)
>W1710881417
LMTB01000006
Actinomycetota
Dietzia timorensis [LMTB]
41767
41693
-
Val
CAC
[ENA]
¡û
>W1710944414
LOQT01000010
Actinomycetota
Corynebacterium glutamicum [LOQT]
1210
1284
+
Val
CAC
[ENA]
¡û
>W1710944536
LOQV01000026
Actinomycetota
Corynebacterium glutamicum [LOQV]
169819
169745
-
Val
CAC
[ENA]
¡û
>W1710944538
LOQW01000006
Actinomycetota
Corynebacterium glutamicum [LOQW]
1210
1284
+
Val
CAC
[ENA]
¡û
>C171044550
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
1922219
1922293
+
Val
CAC
-
¡û
>C171074405
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
1931114
1931188
+
Val
CAC
-
¡û
>C171111121
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
956029
955957
-
Val
CAC
-
¡û
>W131156400
AQPS01000028
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
1203
1277
+
Val
CAC
[ENA]
¡û
>W131159161
AQUV01000001
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
480700
480626
-
Val
CAC
[ENA]
¡û
>W131159295
AQUX01000029
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
415
489
+
Val
CAC
[ENA]
¡û
>C005542
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
1887377
1887451
+
Val
CAC
[Ensembl]
¡û
>C005682
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
1776613
1776684
+
Val
CAC
[Ensembl]
¡û
>C005742
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
1778085
1778156
+
Val
CAC
[Ensembl]
¡û
>C005802
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
1914707
1914781
+
Val
CAC
[Ensembl]
¡û
>W141026596
AKXP01000023
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
1204
1278
+
Val
CAC
[ENA]
¡û
>W141243536
CAJP01000001
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
196
122
-
Val
CAC
[ENA]
¡û
>WENV170719871
LSQX01131968
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2468
2394
-
Val
CAC
[ENA]
¢þ
>WENV170724693
LSQX01315195
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5826
5898
+
Val
CAC
[ENA]
¢þ
>W09127899
ACLI01000088
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
28641
28715
+
Val
CAC
[ENA]
¡û
>C181001609
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1917277
1917349
+
Val
CAC
-
¡û
>C181002223
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
1918450
1918522
+
Val
CAC
-
¡û
>C181064161
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
1467456
1467528
+
Val
CAC
-
¡û
>C181118432
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
1778336
1778408
+
Val
CAC
-
¡û
>C181118496
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
2557749
2557821
+
Val
CAC
-
¡û
>C181143907
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1310132
1310058
-
Val
CAC
-
¡û
>W141800919
JPDH01000193
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
5368
5294
-
Val
CAC
[ENA]
¡û
>W1910374168
FUIB01000008
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
413538
413466
-
Val
CAC
[ENA]
¡û
>C141002627
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
1617664
1617590
-
Val
CAC
[Ensembl]
¡û
>W1910438324
FWCI01000015
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
94498
94426
-
Val
CAC
[ENA]
¡û
>W1910573033
JOLA01000030
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
343971
343899
-
Val
CAC
[ENA]
¡û
>W1911551181
OVSI01000001
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
93522
93594
+
Val
CAC
[ENA]
¡û
>W1911630668
PTJO01000003
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
254113
254039
-
Val
CAC
[ENA]
¡û
>W1810568881
QEEY01000002
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
204448
204374
-
Val
CAC
[ENA]
¡û
>C151007289
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
1530277
1530203
-
Val
CAC
[Ensembl]
¡û
>C151012255
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
1643387
1643313
-
Val
CAC
[Ensembl]
¡û
>C151034732
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
1469651
1469579
-
Val
CAC
[Ensembl]
¡û
>C151045681
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
1716083
1716155
+
Val
CAC
-
¡û
>C151084465
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
1551235
1551163
-
Val
CAC
[Ensembl]
¡û
>W11176898
AFYA01000016
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
1175
1249
+
Val
CAC
[ENA]
¡û
>C161003045
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
1950678
1950752
+
Val
CAC
-
¡û
>C161003104
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
1942173
1942247
+
Val
CAC
-
¡û
>C161040448
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
1958933
1959007
+
Val
CAC
-
¡û
>C161063657
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
1896757
1896829
+
Val
CAC
[Ensembl]
¡û
>C161089877
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1728479
1728553
+
Val
CAC
[Ensembl]
¡û
>C161096076
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
1916736
1916810
+
Val
CAC
-
¡û
>W1610069829
BCSU01000017
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
73505
73579
+
Val
CAC
[ENA]
¡û
>C131012030
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
1967672
1967746
+
Val
CAC
[Ensembl]
¡û
>C131012090
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
1967671
1967745
+
Val
CAC
[Ensembl]
¡û
>C131019755
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
1776612
1776684
+
Val
CAC
[Ensembl]
¡û
>W1610743763
LMTB01000006
Actinomycetota
Dietzia timorensis [LMTB]
41767
41693
-
Val
CAC
[ENA]
¡û
>W1710039872
BAYH01000022
Actinomycetota
Corynebacterium glutamicum [BAYH]
287
361
+
Val
CAC
[ENA]
¡û
>W1710067202
BCSU01000017
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
73505
73579
+
Val
CAC
[ENA]
¡û
>W1710608180
FXAR01000009
Actinomycetota
Corynebacterium pollutisoli [FXAR]
8741
8815
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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