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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.663247 (75 seq.)
>W1711334200
MBQD01000020
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
361775
361701
-
Val
GAC
[ENA]
¡û
>C171091478
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
82541
82615
+
Val
GAC
-
¡û
>C171096197
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1240666
1240740
+
Val
GAC
-
¡û
>C171096302
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
3548534
3548460
-
Val
GAC
-
¡û
>WENV180729225
ODGU01265935
[ODGU] human metagenome; G_DNA_Supragingival plaque
78
6
-
Val
GAC
[ENA]
¢þ
>WENV180731923
ODGW01036929
[ODGW] human metagenome; G_DNA_Supragingival plaque
292
220
-
Val
GAC
[ENA]
¢þ
>WENV180734130
ODGZ01002903
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1347
1421
+
Val
GAC
[ENA]
¢þ
>WENV180734153
ODGZ01003216
[ODGZ] human metagenome; G_DNA_Supragingival plaque
5935
5863
-
Val
GAC
[ENA]
¢þ
>WENV180735594
ODHB01000076
[ODHB] human metagenome; G_DNA_Supragingival plaque
32489
32415
-
Val
GAC
[ENA]
¢þ
>WENV180750038
ODHS01000285
[ODHS] human metagenome; G_DNA_Supragingival plaque
4622
4696
+
Val
GAC
[ENA]
¢þ
>WENV180754997
ODHU01006635
[ODHU] human metagenome; G_DNA_Supragingival plaque
1924
1998
+
Val
GAC
[ENA]
¢þ
>WENV180777160
ODIL01000195
[ODIL] human metagenome; G_DNA_Supragingival plaque
12373
12447
+
Val
GAC
[ENA]
¢þ
>WENV180781572
ODIP01000829
[ODIP] human metagenome; G_DNA_Supragingival plaque
902
976
+
Val
GAC
[ENA]
¢þ
>WENV180789107
ODIS01234690
[ODIS] human metagenome; G_DNA_Supragingival plaque
76
4
-
Val
GAC
[ENA]
¢þ
>WENV180797051
ODJB01026544
[ODJB] human metagenome; G_DNA_Supragingival plaque
235
163
-
Val
GAC
[ENA]
¢þ
>WENV180801133
ODJD01009131
[ODJD] human metagenome; G_DNA_Supragingival plaque
1445
1517
+
Val
GAC
[ENA]
¢þ
>WENV180805329
ODJG01171799
[ODJG] human metagenome; G_DNA_Supragingival plaque
73
1
-
Val
GAC
[ENA]
¢þ
>WENV180814107
ODJO01007197
[ODJO] human metagenome; G_DNA_Supragingival plaque
4601
4673
+
Val
GAC
[ENA]
¢þ
>WENV180822980
ODJW01001483
[ODJW] human metagenome; G_DNA_Supragingival plaque
4814
4886
+
Val
GAC
[ENA]
¢þ
>WENV180824647
ODJX01023858
[ODJX] human metagenome; G_DNA_Supragingival plaque
262
334
+
Val
GAC
[ENA]
¢þ
>WENV180832912
ODKC01007734
[ODKC] human metagenome; G_DNA_Supragingival plaque
468
394
-
Val
GAC
[ENA]
¢þ
>WENV180833925
ODKD01001002
[ODKD] human metagenome; G_DNA_Supragingival plaque
8852
8924
+
Val
GAC
[ENA]
¢þ
>WENV180835930
ODKE01021698
[ODKE] human metagenome; G_DNA_Supragingival plaque
284
356
+
Val
GAC
[ENA]
¢þ
>WENV180843615
ODKN01006079
[ODKN] human metagenome; G_DNA_Supragingival plaque
2634
2560
-
Val
GAC
[ENA]
¢þ
>WENV180847434
ODKT01082682
[ODKT] human metagenome; G_DNA_Supragingival plaque
165
239
+
Val
GAC
[ENA]
¢þ
>WENV180859322
ODLD01000331
[ODLD] human metagenome; G_DNA_Supragingival plaque
28288
28216
-
Val
GAC
[ENA]
¢þ
>WENV180922500
ODTJ01004886
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2863
2791
-
Val
GAC
[ENA]
¢þ
>WENV180924112
ODTK01001237
[ODTK] human metagenome; G_DNA_Supragingival plaque
5938
5866
-
Val
GAC
[ENA]
¢þ
>WENV180927999
ODTM01009547
[ODTM] human metagenome; G_DNA_Supragingival plaque
466
538
+
Val
GAC
[ENA]
¢þ
>WENV180933302
ODTR01000015
[ODTR] human metagenome; G_DNA_Supragingival plaque
8979
8905
-
Val
GAC
[ENA]
¢þ
>WENV180934377
ODTS01000001
[ODTS] human metagenome; G_DNA_Subgingival plaque
264946
264872
-
Val
GAC
[ENA]
¢þ
>WENV180938332
ODTX01001438
[ODTX] human metagenome; G_DNA_Supragingival plaque
13000
12928
-
Val
GAC
[ENA]
¢þ
>WENV180939047
ODTX01013534
[ODTX] human metagenome; G_DNA_Supragingival plaque
1461
1387
-
Val
GAC
[ENA]
¢þ
>WENV180944441
ODUC01017507
[ODUC] human metagenome; G_DNA_Supragingival plaque
2055
2127
+
Val
GAC
[ENA]
¢þ
>WENV180958060
ODUL01000250
[ODUL] human metagenome; G_DNA_Supragingival plaque
12090
12164
+
Val
GAC
[ENA]
¢þ
>WENV180964049
ODUO01000164
[ODUO] human metagenome; G_DNA_Supragingival plaque
43461
43535
+
Val
GAC
[ENA]
¢þ
>WENV180972948
ODUW01000576
[ODUW] human metagenome; G_DNA_Supragingival plaque
11308
11236
-
Val
GAC
[ENA]
¢þ
>WENV180980385
ODVE01000095
[ODVE] human metagenome; G_DNA_Supragingival plaque
32399
32471
+
Val
GAC
[ENA]
¢þ
>WENV180982462
ODVF01000024
[ODVF] human metagenome; G_DNA_Supragingival plaque
72359
72431
+
Val
GAC
[ENA]
¢þ
>WENV180987403
ODVK01021056
[ODVK] human metagenome; G_DNA_Supragingival plaque
1003
931
-
Val
GAC
[ENA]
¢þ
>WENV181002365
ODVX01000230
[ODVX] human metagenome; G_DNA_Supragingival plaque
14449
14377
-
Val
GAC
[ENA]
¢þ
>WENV181009786
ODWE01209993
[ODWE] human metagenome; G_DNA_Supragingival plaque
73
1
-
Val
GAC
[ENA]
¢þ
>WENV181020025
ODWU01038014
[ODWU] human metagenome; G_DNA_Supragingival plaque
812
884
+
Val
GAC
[ENA]
¢þ
>WENV181049904
ODYD01003130
[ODYD] human metagenome; G_DNA_Supragingival plaque
5820
5892
+
Val
GAC
[ENA]
¢þ
>WENV181050373
ODYD01015297
[ODYD] human metagenome; G_DNA_Supragingival plaque
625
553
-
Val
GAC
[ENA]
¢þ
>WENV181063215
ODYP01000220
[ODYP] human metagenome; G_DNA_Supragingival plaque
33526
33598
+
Val
GAC
[ENA]
¢þ
>WENV181068064
ODZI01113377
[ODZI] human metagenome; G_DNA_Supragingival plaque
343
415
+
Val
GAC
[ENA]
¢þ
>WENV181070994
OEAE01066825
[OEAE] human metagenome; G_DNA_Supragingival plaque
76
4
-
Val
GAC
[ENA]
¢þ
>WENV181076803
OEAP01014440
[OEAP] human metagenome; G_DNA_Supragingival plaque
1938
2010
+
Val
GAC
[ENA]
¢þ
>WENV181079189
OEAS01002773
[OEAS] human metagenome; G_DNA_Supragingival plaque
9359
9285
-
Val
GAC
[ENA]
¢þ
>WENV181082563
OEAV01000074
[OEAV] human metagenome; G_DNA_Supragingival plaque
34852
34778
-
Val
GAC
[ENA]
¢þ
>WENV181090908
OEBC01006091
[OEBC] human metagenome; G_DNA_Supragingival plaque
1019
1093
+
Val
GAC
[ENA]
¢þ
>WENV181121933
OEFL01033308
[OEFL] human metagenome; G_DNA_Supragingival plaque
429
503
+
Val
GAC
[ENA]
¢þ
>WENV181144102
OEHM01090343
[OEHM] human metagenome; G_DNA_Supragingival plaque
266
194
-
Val
GAC
[ENA]
¢þ
>WENV181146185
OEHQ01001606
[OEHQ] human metagenome; G_DNA_Supragingival plaque
6710
6782
+
Val
GAC
[ENA]
¢þ
>WENV181152419
OEIA01001314
[OEIA] human metagenome; G_DNA_Supragingival plaque
1528
1600
+
Val
GAC
[ENA]
¢þ
>WENV181156544
OEIE01028093
[OEIE] human metagenome; G_DNA_Supragingival plaque
825
897
+
Val
GAC
[ENA]
¢þ
>WENV181159264
OEIH01124240
[OEIH] human metagenome; G_DNA_Supragingival plaque
179
253
+
Val
GAC
[ENA]
¢þ
>WENV181177205
OEJS01000125
[OEJS] human metagenome; G_DNA_Supragingival plaque
16095
16021
-
Val
GAC
[ENA]
¢þ
>WENV181179105
OEJT01001362
[OEJT] human metagenome; G_DNA_Supragingival plaque
10940
10868
-
Val
GAC
[ENA]
¢þ
>WENV181181676
OEJV01000062
[OEJV] human metagenome; G_DNA_Supragingival plaque
37828
37756
-
Val
GAC
[ENA]
¢þ
>WENV183508610
OMHE01004293
[OMHE] human oral metagenome; human oral
1037
965
-
Val
GAC
[ENA]
¢þ
>WENV170685530
LFRM01096943
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1082
1156
+
Val
GAC
[ENA]
¢þ
>WENV170718108
LSQX01061988
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11
85
+
Val
GAC
[ENA]
¢þ
>C191173829
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1678640
1678712
+
Val
GAC
-
¡û
>C191210844
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1674820
1674892
+
Val
GAC
-
¡û
>C191214559
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1666155
1666227
+
Val
GAC
-
¡û
>W141557424
JHVD01000006
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
105629
105703
+
Val
GAC
[ENA]
¡û
>W1510061426
CCYJ01000020
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
399472
399398
-
Val
GAC
[ENA]
¡û
>C121002936
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1690979
1691053
+
Val
GAC
[Ensembl]
¡û
>W1610074478
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
518194
518120
-
Val
GAC
[ENA]
¡û
>W1611066167
MBQD01000020
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
361775
361701
-
Val
GAC
[ENA]
¡û
>W1710071596
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
518194
518120
-
Val
GAC
[ENA]
¡û
>W1710531777
FNPU01000003
Actinomycetota
Tessaracoccus flavus [FNPU]
80081
80155
+
Val
GAC
[ENA]
¡û
>W1710588350
FQZG01000061
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
19059
19133
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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