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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.667632 (44 seq.)
>W1710873119
LMMN01000057
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
56193
56267
+
Thr
GGT
[ENA]
¡û
>W1710873216
LMMQ01000007
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
86749
86675
-
Thr
GGT
[ENA]
¡û
>W1710874365
LMNN01000024
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
583514
583440
-
Thr
GGT
[ENA]
¡û
>W1710874429
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
50185
50111
-
Thr
GGT
[ENA]
¡û
>W1710874479
LMNQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
9165
9091
-
Thr
GGT
[ENA]
¡û
>W1710874561
LMNS01000009
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
167574
167648
+
Thr
GGT
[ENA]
¡û
>W1710878294
LMQV01000012
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
405327
405401
+
Thr
GGT
[ENA]
¡û
>W1711078667
LSNC01000028
Alphaproteobacteria
Methylorubrum populi [LSNC]
94163
94089
-
Thr
GGT
[ENA]
¡û
>W1711571741
MNAO01000027
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
14741
14667
-
Thr
GGT
[ENA]
¡û
>W131051712
AMXU01000003
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
371805
371879
+
Thr
GGT
[ENA]
¡û
>C171092145
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1531266
1531340
+
Thr
GGT
-
¡û
>C171115226
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1491819
1491745
-
Thr
GGT
-
¡û
>W08002422
ABEX01000016
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
98979
99053
+
Thr
GGT
[ENA]
¡û
>C08006506
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
5469838
5469767
-
Thr
GGT
[Ensembl]
¡û
>C08006653
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5800354
5800283
-
Thr
GGT
[Ensembl]
¡û
>WENV183726185
PJQF01105586
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
176
250
+
Thr
GGT
[ENA]
¢þ
>WENV170582674
FUFK010106789
[FUFK] metagenome; unknown
1195
1121
-
Thr
GGT
[ENA]
¢þ
>C181000365
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
5704447
5704373
-
Thr
GGT
-
¡û
>W09106838
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
591630
591704
+
Thr
GGT
[ENA]
¡û
>W09107181
ABFR01000004
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
370282
370208
-
Thr
GGT
[ENA]
¡û
>C181175652
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
5662666
5662592
-
Thr
GGT
-
¡û
>C181180019
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
612846
612772
-
Thr
GGT
-
¡û
>C181227832
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
245006
245080
+
Thr
GGT
-
¡û
>C09107463
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
76
2
-
Thr
GGT
[Ensembl]
¡û
>C09107522
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5943118
5943044
-
Thr
GGT
[Ensembl]
¡û
>C09107623
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
5510672
5510598
-
Thr
GGT
[Ensembl]
¡û
>W1810658560
QJJJ01000024
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
23222
23148
-
Thr
GGT
[ENA]
¡û
>SRA1014166
SRR023845.23678
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
111
37
-
Thr
GGT
[SRA]
>SRA1014950
SRR023845.394694
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
99
25
-
Thr
GGT
[SRA]
>C161004982
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
5434800
5434726
-
Thr
GGT
[Ensembl]
¡û
>W1610042946
BAZM01000028
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
6463
6389
-
Thr
GGT
[ENA]
¡û
>W1610043160
BAZP01000014
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
7752
7678
-
Thr
GGT
[ENA]
¡û
>W121010665
AGJK01000024
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
36016
35942
-
Thr
GGT
[ENA]
¡û
>W1610735465
LMMN01000057
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
56193
56267
+
Thr
GGT
[ENA]
¡û
>W1610735562
LMMQ01000007
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
86749
86675
-
Thr
GGT
[ENA]
¡û
>W1610736711
LMNN01000024
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
583514
583440
-
Thr
GGT
[ENA]
¡û
>W1610736775
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
50185
50111
-
Thr
GGT
[ENA]
¡û
>W1610736825
LMNQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
9165
9091
-
Thr
GGT
[ENA]
¡û
>W1610736907
LMNS01000009
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
167574
167648
+
Thr
GGT
[ENA]
¡û
>W1610740640
LMQV01000012
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
405327
405401
+
Thr
GGT
[ENA]
¡û
>W1610917577
LSNC01000028
Alphaproteobacteria
Methylorubrum populi [LSNC]
94163
94089
-
Thr
GGT
[ENA]
¡û
>W1710040106
BAZM01000028
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
6463
6389
-
Thr
GGT
[ENA]
¡û
>W1710040320
BAZP01000014
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
7752
7678
-
Thr
GGT
[ENA]
¡û
>W1710567549
FOSV01000010
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
111352
111278
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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