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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669728 (79 seq.)
>C171064249
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590320
2590394
+
Glu
TTC
-
¡û
>C171064276
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618400
2618474
+
Glu
TTC
-
¡û
>C171064307
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1117627
1117553
-
Glu
TTC
-
¡û
>C171064312
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
716058
715984
-
Glu
TTC
-
¡û
>C171064319
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709760
709686
-
Glu
TTC
-
¡û
>C171064346
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695817
695743
-
Glu
TTC
-
¡û
>C171064358
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689094
689020
-
Glu
TTC
-
¡û
>C171109196
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396146
1396220
+
Glu
TTC
-
¡û
>C171109223
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424225
1424299
+
Glu
TTC
-
¡û
>C171109249
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4510179
4510105
-
Glu
TTC
-
¡û
>C171109254
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108610
4108536
-
Glu
TTC
-
¡û
>C171109261
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4102312
4102238
-
Glu
TTC
-
¡û
>C171109288
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4088369
4088295
-
Glu
TTC
-
¡û
>C171109300
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081646
4081572
-
Glu
TTC
-
¡û
>WENV180042588
LQAF01010099
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
500
426
-
Glu
TTC
[ENA]
¢þ
>WENV180042593
LQAF01010188
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
16
88
+
Glu
TTC
[ENA]
¢þ
>WENV180043055
LQAH01000736
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
6546
6472
-
Glu
TTC
[ENA]
¢þ
>WENV180043159
LQAH01004718
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
656
582
-
Glu
TTC
[ENA]
¢þ
>WENV180043192
LQAH01009398
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
64
138
+
Glu
TTC
[ENA]
¢þ
>WENV180043241
LQAH01014131
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
684
610
-
Glu
TTC
[ENA]
¢þ
>WENV180043377
LQAH01038377
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
86
160
+
Glu
TTC
[ENA]
¢þ
>WENV180043647
LQAI01004623
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
46
120
+
Glu
TTC
[ENA]
¢þ
>WENV180043654
LQAI01004738
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
143
69
-
Glu
TTC
[ENA]
¢þ
>WENV180043727
LQAI01012482
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
269
343
+
Glu
TTC
[ENA]
¢þ
>WENV180043792
LQAI01020402
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
250
324
+
Glu
TTC
[ENA]
¢þ
>WENV180094580
MTBK01016194
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5212
5138
-
Glu
TTC
[ENA]
¢þ
>WENV180297474
OBJA01034467
[OBJA] soil metagenome; sediment, water from around vicinity
700
774
+
Glu
TTC
[ENA]
¢þ
>WENV183705110
PDWI01001047
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
44663
44737
+
Glu
TTC
[ENA]
¢þ
>WENV183705979
PDWI01002811
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25464
25390
-
Glu
TTC
[ENA]
¢þ
>WENV183706296
PDWI01003688
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
21725
21651
-
Glu
TTC
[ENA]
¢þ
>WENV183706757
PDWI01005437
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16437
16363
-
Glu
TTC
[ENA]
¢þ
>WENV183707115
PDWI01006816
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14174
14100
-
Glu
TTC
[ENA]
¢þ
>WENV183708126
PDWI01013235
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7913
7987
+
Glu
TTC
[ENA]
¢þ
>WENV183710752
PDWI01052889
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
82
8
-
Glu
TTC
[ENA]
¢þ
>WENV183711534
PDWI01072258
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2602
2676
+
Glu
TTC
[ENA]
¢þ
>WENV183714366
PDWI01179971
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
243
169
-
Glu
TTC
[ENA]
¢þ
>WENV183716382
PDWI01305076
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
844
918
+
Glu
TTC
[ENA]
¢þ
>WENV183717509
PDWJ01001031
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3401
3327
-
Glu
TTC
[ENA]
¢þ
>WENV183718699
PDWJ01005943
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9520
9594
+
Glu
TTC
[ENA]
¢þ
>WENV183719217
PDWJ01010849
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6163
6089
-
Glu
TTC
[ENA]
¢þ
>WENV183721521
PDWJ01073624
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
912
986
+
Glu
TTC
[ENA]
¢þ
>WENV183746883
PPCM01000032
[PPCM] marine sediment metagenome; marine sediment
325057
324983
-
Glu
TTC
[ENA]
¢þ
>WENV183747416
PPCM01001809
[PPCM] marine sediment metagenome; marine sediment
8497
8423
-
Glu
TTC
[ENA]
¢þ
>WENV183747501
PPCM01003604
[PPCM] marine sediment metagenome; marine sediment
4294
4220
-
Glu
TTC
[ENA]
¢þ
>WENV183747666
PPCM01015227
[PPCM] marine sediment metagenome; marine sediment
148
222
+
Glu
TTC
[ENA]
¢þ
>WENV183747673
PPCM01015227
[PPCM] marine sediment metagenome; marine sediment
834
908
+
Glu
TTC
[ENA]
¢þ
>WENV183747755
PPCM01030137
[PPCM] marine sediment metagenome; marine sediment
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV183747806
PPCM01043189
[PPCM] marine sediment metagenome; marine sediment
177
251
+
Glu
TTC
[ENA]
¢þ
>WENV170635465
JDSF01029499
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
256
182
-
Glu
TTC
[ENA]
¢þ
>WENV170635477
JDSF01031079
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV170645317
JMSV01000151
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
5
79
+
Glu
TTC
[ENA]
¢þ
>WENV170645431
JMSV01004891
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
660
586
-
Glu
TTC
[ENA]
¢þ
>WENV170674687
LCWY01000181
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
6241
6167
-
Glu
TTC
[ENA]
¢þ
>WENV170674973
LCWZ01000168
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
6586
6512
-
Glu
TTC
[ENA]
¢þ
>WENV170675149
LCWZ01009875
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
809
735
-
Glu
TTC
[ENA]
¢þ
>WENV170675171
LCWZ01011728
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
663
589
-
Glu
TTC
[ENA]
¢þ
>WENV170675206
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
449
523
+
Glu
TTC
[ENA]
¢þ
>WENV170675338
LCWZ01042818
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
345
271
-
Glu
TTC
[ENA]
¢þ
>WENV170692263
LGOV01001797
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
449
523
+
Glu
TTC
[ENA]
¢þ
>WENV170692996
LGOV01058449
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
422
496
+
Glu
TTC
[ENA]
¢þ
>WENV170699105
LGVF01483016
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
828
754
-
Glu
TTC
[ENA]
¢þ
>W141561160
JHYF01000003
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
381
455
+
Glu
TTC
[ENA]
¡û
>W1810000007
BDQY01000008
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
65447
65373
-
Glu
TTC
[ENA]
¡û
>W1810000055
BDQY01000074
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
126
52
-
Glu
TTC
[ENA]
¡û
>W1810000067
BDQY01000094
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
130
204
+
Glu
TTC
[ENA]
¡û
>W1810000068
BDQY01000096
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
251
177
-
Glu
TTC
[ENA]
¡û
>C151057228
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166904
1166978
+
Glu
TTC
[Ensembl]
¡û
>C151057244
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178360
1178434
+
Glu
TTC
[Ensembl]
¡û
>C151057268
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
4170728
4170654
-
Glu
TTC
[Ensembl]
¡û
>C151057272
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724525
3724451
-
Glu
TTC
[Ensembl]
¡û
>W1511527543
JYHU01000016
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
250834
250760
-
Glu
TTC
[ENA]
¡û
>W1710506677
FMUS01000011
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
82126
82052
-
Glu
TTC
[ENA]
¡û
>W1710506682
FMUS01000030
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
648
722
+
Glu
TTC
[ENA]
¡û
>W1710506713
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
78
4
-
Glu
TTC
[ENA]
¡û
>W1710520420
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
550053
549979
-
Glu
TTC
[ENA]
¡û
>W1710520448
FNFP01000009
Bacillota
Natronincola ferrireducens [FNFP]
34935
34861
-
Glu
TTC
[ENA]
¡û
>W1710520451
FNFP01000015
Bacillota
Natronincola ferrireducens [FNFP]
15911
15837
-
Glu
TTC
[ENA]
¡û
>W1710553647
FOHU01000003
Bacillota
Natronincola peptidivorans [FOHU]
325654
325580
-
Glu
TTC
[ENA]
¡û
>W1710589462
FRAE01000084
Bacillota
Tepidibacter formicigenes DSM 15518 [FRAE]
339
265
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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