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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671191 (34 seq.)
>C007105
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
140862
140936
+
Gly
GCC
[Ensembl]
¡û
>WENV181231504
OFEK01032651
[OFEK] activated sludge metagenome; Anaerobic digester
90
164
+
Gly
GCC
[ENA]
¢þ
>W08011371
ABVG01000001
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
249051
249125
+
Gly
GCC
[ENA]
¡û
>W141251460
CBQO010000007
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
77153
77227
+
Gly
GCC
[ENA]
¡û
>WENV170686683
LFRM01158871
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
27802
27728
-
Gly
GCC
[ENA]
¢þ
>WENV170687654
LFRM01204392
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
131283
131357
+
Gly
GCC
[ENA]
¢þ
>WENV170688922
LFRM01268413
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20854
20780
-
Gly
GCC
[ENA]
¢þ
>WENV170691635
LFRM01407623
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
40972
41046
+
Gly
GCC
[ENA]
¢þ
>WENV170718661
LSQX01085916
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
31891
31817
-
Gly
GCC
[ENA]
¢þ
>WENV170721201
LSQX01182506
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7281
7207
-
Gly
GCC
[ENA]
¢þ
>WENV170975932
MTKZ01003291
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
862
936
+
Gly
GCC
[ENA]
¢þ
>C181114040
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
3196476
3196402
-
Gly
GCC
-
¡û
>C181114042
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
2697704
2697630
-
Gly
GCC
-
¡û
>W09100435
AABG04000003
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
38641
38567
-
Gly
GCC
[ENA]
¡û
>W09135662
ACVX01000017
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
31773
31847
+
Gly
GCC
[ENA]
¡û
>W1910884577
NEMB01000001
Bacillota
Acetivibrio saccincola A7 [NEMB]
17636
17562
-
Gly
GCC
[ENA]
¡û
>W1910884586
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
982142
982216
+
Gly
GCC
[ENA]
¡û
>W1910884594
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
3678563
3678489
-
Gly
GCC
[ENA]
¡û
>W1910884629
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
11777
11703
-
Gly
GCC
[ENA]
¡û
>W1911496627
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1529939
1530013
+
Gly
GCC
[ENA]
¡û
>W1911572339
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2500793
2500719
-
Gly
GCC
[ENA]
¡û
>C11106491
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2495252
2495178
-
Gly
GCC
[Ensembl]
¡û
>C161060800
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2500793
2500719
-
Gly
GCC
-
¡û
>C161097552
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2500104
2500030
-
Gly
GCC
-
¡û
>W121061305
AJGS01000048
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
31778
31852
+
Gly
GCC
[ENA]
¡û
>W121061362
AJGT01000030
Bacillota
Acetivibrio thermocellus YS [AJGT]
41614
41540
-
Gly
GCC
[ENA]
¡û
>W1610605601
LFSC01000032
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
27802
27728
-
Gly
GCC
[ENA]
¡û
>W1610605604
LFSC01000036
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
131283
131357
+
Gly
GCC
[ENA]
¡û
>W1610605977
LFSL01000112
Bacillota
Clostridiales bacterium DTU058 [LFSL]
20854
20780
-
Gly
GCC
[ENA]
¡û
>W1610605999
LFSL01000168
Bacillota
Clostridiales bacterium DTU058 [LFSL]
40972
41046
+
Gly
GCC
[ENA]
¡û
>W1710726888
LFSC01000032
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
27802
27728
-
Gly
GCC
[ENA]
¡û
>W1710726891
LFSC01000036
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
131283
131357
+
Gly
GCC
[ENA]
¡û
>W1710727264
LFSL01000112
Bacillota
Clostridiales bacterium DTU058 [LFSL]
20854
20780
-
Gly
GCC
[ENA]
¡û
>W1710727286
LFSL01000168
Bacillota
Clostridiales bacterium DTU058 [LFSL]
40972
41046
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK