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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673079 (32 seq.)
>A171000234
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
270209
270281
+
His
GTG
-
¡û
>A171003392
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
236806
236878
+
His
GTG
-
¡û
>A171003416
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
247932
248004
+
His
GTG
-
¡û
>A171005914
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
582802
582874
+
His
GTG
-
¡û
>A171006030
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1562068
1561996
-
His
GTG
-
¡û
>WENV180052612
MPLU02312252
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
867
795
-
His
GTG
[ENA]
¢þ
>WENV180053832
MPLV02047042
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
4964
5036
+
His
GTG
[ENA]
¢þ
>WENV181379781
OFRD01008416
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1033
961
-
His
GTG
[ENA]
¢þ
>WENV181385904
OFRL01000074
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
48019
48091
+
His
GTG
[ENA]
¢þ
>WENV170145372
CENY01326469
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
70
142
+
His
GTG
[ENA]
¢þ
>WENV170532541
CEWO01049735
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1296
1224
-
His
GTG
[ENA]
¢þ
>WENV170748511
LUMD01031893
[LUMD] marine metagenome; Red Sea water column Station 34 - depth 258m
447
374
-
His
GTG
[ENA]
¢þ
>WENV170750150
LUMG01000555
[LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m
2529
2457
-
His
GTG
[ENA]
¢þ
>WENV170752629
LUMJ01001974
[LUMJ] marine metagenome; Red Sea water column Station 22 - depth 500m
4298
4225
-
His
GTG
[ENA]
¢þ
>WENV170756519
LUMP01000058
[LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m
16335
16263
-
His
GTG
[ENA]
¢þ
>WENV170904977
MDTE01019673
[MDTE] marine metagenome; seawater
4007
4079
+
His
GTG
[ENA]
¢þ
>W1910126230
BGKI01000002
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
187257
187185
-
His
GTG
[ENA]
¡û
>W1910572974
JNVL01000035
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
5641
5569
-
His
GTG
[ENA]
¡û
>W1910572982
JOKN01000003
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN]
33486
33558
+
His
GTG
[ENA]
¡û
>W1910573209
JOSY01000007
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
5189
5261
+
His
GTG
[ENA]
¡û
>W1910573235
JOSZ01000011
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-P11 [JOSZ]
14022
14094
+
His
GTG
[ENA]
¡û
>W1910573258
JOTA01000030
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA]
5259
5187
-
His
GTG
[ENA]
¡û
>W1910573299
JOTD01000034
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
5211
5283
+
His
GTG
[ENA]
¡û
>W1610000539
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
1176084
1176156
+
His
GTG
[ENA]
¡û
>W1610003101
AEXL02000118
Nitrososphaerota
Candidatus Nitrosopumilus salaria salaria BD31 [AEXL]
15649
15721
+
His
GTG
[ENA]
¡û
>W1610005408
AJVI01000006
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
38630
38702
+
His
GTG
[ENA]
¡û
>W1610005418
AJVJ01000006
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
5210
5138
-
His
GTG
[ENA]
¡û
>W1610005433
AJVJ01000016
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
45468
45540
+
His
GTG
[ENA]
¡û
>W1610005449
AJVJ01000037
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
149833
149905
+
His
GTG
[ENA]
¡û
>W1610597482
LFEW01000005
Nitrososphaerota
Thaumarchaeota archaeon casp-thauma1 [LFEW]
80925
80997
+
His
GTG
[ENA]
¡û
>W1610617254
LGTD01000458
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
209
281
+
His
GTG
[ENA]
¡û
>W1610855525
LQMW01000019
Nitrososphaerota
Nitrosopumilus sp. Nsub [LQMW]
121357
121285
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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