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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.674065 (28 seq.)
>W131036547
ALVW01000014
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
407747
407820
+
Asn
GTT
[ENA]
¡û
>W131089972
AOFE01000016
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
4436
4509
+
Asn
GTT
[ENA]
¡û
>W1711666741
MRCF01000109
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
11289
11362
+
Asn
GTT
[ENA]
¡û
>W1711711344
MTAV01000161
Cyanobacteriota
Nostoc sp. T09 [MTAV]
15939
15866
-
Asn
GTT
[ENA]
¡û
>W1711711368
MTAW01000113
Cyanobacteriota
Nostoc sp. 106C [MTAW]
2349
2422
+
Asn
GTT
[ENA]
¡û
>W1711711426
MTAX01000049
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
57607
57534
-
Asn
GTT
[ENA]
¡û
>w021699
AAVW01000042
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
2502
2578
+
Asn
GTT
[ENA]
¡û
>C08006927
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5655893
5655822
-
Asn
GTT
[Ensembl]
¡û
>WENV170954237
MJUF01004823
[MJUF] soil metagenome; viral particles from soil sample MG6
337
266
-
Asn
GTT
[ENA]
¢þ
>WENV171003120
NNBT01001485
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1547
1476
-
Asn
GTT
[ENA]
¢þ
>WENV171003428
NNBU01000012
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
110204
110133
-
Asn
GTT
[ENA]
¢þ
>WENV171003674
NNBV01000024
[NNBV] plant metagenome; symbiotic tissue sample KVS11
18320
18249
-
Asn
GTT
[ENA]
¢þ
>C181043616
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
1325729
1325802
+
Asn
GTT
-
¡û
>C181105235
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
5963728
5963799
+
Asn
GTT
-
¡û
>C181137800
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
2065634
2065705
+
Asn
GTT
-
¡û
>C191001289
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2559605
2559532
-
Asn
GTT
-
¡û
>W1910008415
BDGE01000073
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
123315
123242
-
Asn
GTT
[ENA]
¡û
>W1910646655
LWSY01000143
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
86245
86174
-
Asn
GTT
[ENA]
¡û
>W1911118761
NOLJ01000010
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
56440
56369
-
Asn
GTT
[ENA]
¡û
>W1911244311
NSHF01000734
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
1234
1305
+
Asn
GTT
[ENA]
¡û
>W1511501707
JXCB01000004
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
207347
207420
+
Asn
GTT
[ENA]
¡û
>C161005328
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
1152399
1152472
+
Asn
GTT
[Ensembl]
¡û
>W1610003565
AGCR01000087
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
7636
7565
-
Asn
GTT
[ENA]
¡û
>W1610084880
CDHJ01000279
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
18015
17944
-
Asn
GTT
[ENA]
¡û
>W1610979401
LWAJ01000183
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
1944
2017
+
Asn
GTT
[ENA]
¡û
>W1710004185
AGCR01000087
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
7636
7565
-
Asn
GTT
[ENA]
¡û
>W1710087967
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
1667382
1667455
+
Asn
GTT
[ENA]
¡û
>W1710089742
CDHJ01000279
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
18015
17944
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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