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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.676094 (6 seq.)
>A171002944
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
609191
609263
+
Ala
TGC
-
¡û
>WENV180014231
FPIC01105892
[FPIC] soil metagenome; Soil
1
73
+
Ala
TGC
[ENA]
¢þ
>At0200
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1424045
1424139
+
Ala
TGC
[Ensembl]
¡û
>At0263
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1347059
1346988
-
Ala
TGC
[Ensembl]
¡û
>At0311
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
321593
321489
-
Ala
TGC
[Ensembl]
¡û
>At0348
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1705194
1705288
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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