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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67626 (125 seq.)
>W1711510644
MLBG01000098
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
10845
10931
+
Leu
CAG
[ENA]
¡û
>W1711581252
MNTW01000003
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
34950
35036
+
Leu
CAG
[ENA]
¡û
>WENV180276548
OBHU01036261
[OBHU] human gut metagenome; feces
160
74
-
Leu
CAG
[ENA]
¡û
>W141027997
ALAO01000261
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
12416
12330
-
Leu
CAG
[ENA]
¡û
>WENV180579877
OCMD01085697
[OCMD] human gut metagenome; human gut
76
162
+
Leu
CAG
[ENA]
¡û
>WENV180850785
ODKV01011781
[ODKV] human metagenome; G_DNA_Stool
3826
3740
-
Leu
CAG
[ENA]
¡û
>WENV180851574
ODKV01110463
[ODKV] human metagenome; G_DNA_Stool
119
35
-
Leu
CAG
[ENA]
¡û
>WENV180962315
ODUN01009332
[ODUN] human metagenome; G_DNA_Stool
440
526
+
Leu
CAG
[ENA]
¡û
>WENV181024653
ODWX01138848
[ODWX] human metagenome; G_DNA_Stool
128
42
-
Leu
CAG
[ENA]
¡û
>WENV181116565
OEFA01021819
[OEFA] human gut metagenome; human gut
311
225
-
Leu
CAG
[ENA]
¡û
>WENV181119447
OEFH01262351
[OEFH] human metagenome; G_DNA_Stool
24
110
+
Leu
CAG
[ENA]
¡û
>WENV181241923
OFFF01013005
[OFFF] mouse gut metagenome; faeces
1763
1677
-
Leu
CAG
[ENA]
¡û
>WENV181243130
OFFG01017215
[OFFG] mouse gut metagenome; faeces
1953
1867
-
Leu
CAG
[ENA]
¡û
>WENV181247210
OFFK01009477
[OFFK] mouse gut metagenome; faeces
3959
3873
-
Leu
CAG
[ENA]
¡û
>WENV181253756
OFFQ01044437
[OFFQ] mouse gut metagenome; faeces
143
229
+
Leu
CAG
[ENA]
¡û
>WENV181262918
OFFY01072354
[OFFY] mouse gut metagenome; faeces
548
462
-
Leu
CAG
[ENA]
¡û
>WENV181263674
OFFZ01008549
[OFFZ] mouse gut metagenome; faeces
238
324
+
Leu
CAG
[ENA]
¡û
>WENV181266077
OFGB01011316
[OFGB] mouse gut metagenome; faeces
1497
1583
+
Leu
CAG
[ENA]
¡û
>WENV181278571
OFGM01003929
[OFGM] mouse gut metagenome; faeces
5338
5252
-
Leu
CAG
[ENA]
¡û
>WENV181282709
OFGP01067208
[OFGP] mouse gut metagenome; faeces
115
201
+
Leu
CAG
[ENA]
¡û
>WENV181291522
OFHB01042047
[OFHB] mouse gut metagenome; faeces
135
221
+
Leu
CAG
[ENA]
¡û
>WENV181332781
OFMA01006594
[OFMA] human gut metagenome; human gut
2279
2365
+
Leu
CAG
[ENA]
¡û
>WENV181341200
OFMH01017952
[OFMH] human gut metagenome; human gut
770
856
+
Leu
CAG
[ENA]
¡û
>WENV181460638
OGEL01030863
[OGEL] metagenome; Human gut stool
599
513
-
Leu
CAG
[ENA]
¡û
>WENV181468966
OGES01024180
[OGES] metagenome; Human gut stool
592
678
+
Leu
CAG
[ENA]
¡û
>WENV181482735
OGFJ01041073
[OGFJ] metagenome; Human gut stool
690
604
-
Leu
CAG
[ENA]
¡û
>WENV181504026
OGGJ01019407
[OGGJ] metagenome; Human gut stool
1130
1044
-
Leu
CAG
[ENA]
¡û
>WENV181505233
OGGK01006299
[OGGK] metagenome; Human gut stool
3129
3215
+
Leu
CAG
[ENA]
¡û
>WENV181505508
OGGK01026275
[OGGK] metagenome; Human gut stool
701
615
-
Leu
CAG
[ENA]
¡û
>WENV181539937
OGIA01001099
[OGIA] metagenome; Human gut stool
17400
17486
+
Leu
CAG
[ENA]
¡û
>WENV181578014
OGJY01000197
[OGJY] metagenome; Human gut stool
80657
80571
-
Leu
CAG
[ENA]
¡û
>WENV181578445
OGJY01001511
[OGJY] metagenome; Human gut stool
11132
11046
-
Leu
CAG
[ENA]
¡û
>WENV181578446
OGJY01001511
[OGJY] metagenome; Human gut stool
7742
7656
-
Leu
CAG
[ENA]
¡û
>WENV181603099
OGLH01009204
[OGLH] metagenome; Human gut stool
234
320
+
Leu
CAG
[ENA]
¡û
>WENV181603896
OGLI01002587
[OGLI] metagenome; Human gut stool
3279
3365
+
Leu
CAG
[ENA]
¡û
>WENV181609135
OGLN01008790
[OGLN] metagenome; Human gut stool
2304
2390
+
Leu
CAG
[ENA]
¡û
>WENV181621691
OGMF01011934
[OGMF] metagenome; Human gut stool
3441
3355
-
Leu
CAG
[ENA]
¡û
>WENV181641112
OGNF01001430
[OGNF] metagenome; Human gut stool
20326
20240
-
Leu
CAG
[ENA]
¡û
>WENV181641261
OGNF01002457
[OGNF] metagenome; Human gut stool
11427
11341
-
Leu
CAG
[ENA]
¡û
>WENV181641262
OGNF01002457
[OGNF] metagenome; Human gut stool
8037
7951
-
Leu
CAG
[ENA]
¡û
>WENV181669273
OGOL01017884
[OGOL] human gut metagenome; faeces
1258
1344
+
Leu
CAG
[ENA]
¡û
>WENV181675932
OGOP01018667
[OGOP] human gut metagenome; faeces
745
659
-
Leu
CAG
[ENA]
¡û
>WENV181676307
OGOP01059882
[OGOP] human gut metagenome; faeces
597
683
+
Leu
CAG
[ENA]
¡û
>WENV181678129
OGOQ01055061
[OGOQ] human gut metagenome; faeces
362
448
+
Leu
CAG
[ENA]
¡û
>WENV181688506
OGOX01062851
[OGOX] human gut metagenome; faeces
623
709
+
Leu
CAG
[ENA]
¡û
>WENV181710223
OGPN01035833
[OGPN] human gut metagenome; faeces
577
663
+
Leu
CAG
[ENA]
¡û
>WENV181753134
OGQQ01082389
[OGQQ] human gut metagenome; faeces
174
260
+
Leu
CAG
[ENA]
¡û
>WENV181772755
OGRD01015857
[OGRD] human gut metagenome; faeces
278
192
-
Leu
CAG
[ENA]
¡û
>WENV181865200
OGWU01011848
[OGWU] human gut metagenome; faeces
2072
1986
-
Leu
CAG
[ENA]
¡û
>WENV181871066
OGWY01083322
[OGWY] human gut metagenome; faeces
371
457
+
Leu
CAG
[ENA]
¡û
>WENV181877503
OGXD01012039
[OGXD] human gut metagenome; faeces
871
785
-
Leu
CAG
[ENA]
¡û
>WENV181902365
OGXW01022718
[OGXW] human gut metagenome; faeces
1380
1466
+
Leu
CAG
[ENA]
¡û
>WENV181907088
OGXZ01028400
[OGXZ] human gut metagenome; faeces
675
589
-
Leu
CAG
[ENA]
¡û
>WENV181913284
OGYE01005133
[OGYE] human gut metagenome; faeces
2540
2626
+
Leu
CAG
[ENA]
¡û
>WENV181915495
OGYF01007956
[OGYF] human gut metagenome; faeces
4900
4814
-
Leu
CAG
[ENA]
¡û
>WENV181942384
OGYZ01000088
[OGYZ] human gut metagenome; faeces
10214
10128
-
Leu
CAG
[ENA]
¡û
>WENV181942681
OGYZ01000808
[OGYZ] human gut metagenome; faeces
3445
3359
-
Leu
CAG
[ENA]
¡û
>WENV181973383
OHAA01036736
[OHAA] human gut metagenome; faeces
826
912
+
Leu
CAG
[ENA]
¡û
>WENV181984514
OHAI01017304
[OHAI] human gut metagenome; faeces
1644
1558
-
Leu
CAG
[ENA]
¡û
>WENV182013354
OHBN01039191
[OHBN] human gut metagenome; feces
56
142
+
Leu
CAG
[ENA]
¡û
>WENV182125718
OHJS01043182
[OHJS] human gut metagenome; feces
555
469
-
Leu
CAG
[ENA]
¡û
>WENV182208633
OHPX01043639
[OHPX] human gut metagenome; feces
340
426
+
Leu
CAG
[ENA]
¡û
>WENV182249167
OHSP01018958
[OHSP] human gut metagenome; feces
717
803
+
Leu
CAG
[ENA]
¡û
>WENV182304482
OHWZ01019052
[OHWZ] human gut metagenome; feces
568
482
-
Leu
CAG
[ENA]
¡û
>WENV182376539
OIDD01039309
[OIDD] human gut metagenome; feces
316
402
+
Leu
CAG
[ENA]
¡û
>WENV182392561
OIEG01045435
[OIEG] human gut metagenome; human gut
456
542
+
Leu
CAG
[ENA]
¡û
>WENV182655612
OJMI01060433
[OJMI] human gut metagenome; feces
559
645
+
Leu
CAG
[ENA]
¡û
>WENV182719868
OJPN01001172
[OJPN] human gut metagenome; stool sample
18192
18106
-
Leu
CAG
[ENA]
¡û
>WENV182719869
OJPN01001172
[OJPN] human gut metagenome; stool sample
14821
14735
-
Leu
CAG
[ENA]
¡û
>WENV182740303
OJQL01006979
[OJQL] human gut metagenome; stool sample
3529
3443
-
Leu
CAG
[ENA]
¡û
>W141279142
JAGC01000003
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
1916066
1916152
+
Leu
CAG
[ENA]
¡û
>WENV182882991
OKSB01002871
[OKSB] human gut metagenome; faeces
7572
7658
+
Leu
CAG
[ENA]
¡û
>WENV182892830
OKSI01007536
[OKSI] human gut metagenome; feces
763
677
-
Leu
CAG
[ENA]
¡û
>WENV183037161
OLGA01009508
[OLGA] human gut metagenome; faeces
2234
2320
+
Leu
CAG
[ENA]
¡û
>WENV183075007
OLIV01005879
[OLIV] human gut metagenome; stool sample
3058
2972
-
Leu
CAG
[ENA]
¡û
>WENV183280772
OLSB01012282
[OLSB] human gut metagenome; faeces
531
617
+
Leu
CAG
[ENA]
¡û
>WENV183396635
OLZI01049251
[OLZI] human gut metagenome; feces
661
575
-
Leu
CAG
[ENA]
¡û
>WENV183537269
OOAG01070620
[OOAG] human gut metagenome; human gut
40
126
+
Leu
CAG
[ENA]
¡û
>WENV183560216
OOBT01010502
[OOBT] human gut metagenome; human gut
831
745
-
Leu
CAG
[ENA]
¡û
>WENV183575117
OOCI01000407
[OOCI] human gut metagenome; human gut
24635
24549
-
Leu
CAG
[ENA]
¡û
>WENV183575285
OOCI01000970
[OOCI] human gut metagenome; human gut
19958
19872
-
Leu
CAG
[ENA]
¡û
>WENV170074773
CDZT01007732
[CDZT] gut metagenome; human stools
19967
19881
-
Leu
CAG
[ENA]
¡û
>WENV170075983
CDZT01051839
[CDZT] gut metagenome; human stools
11124
11038
-
Leu
CAG
[ENA]
¡û
>WENV170075984
CDZT01051839
[CDZT] gut metagenome; human stools
7737
7651
-
Leu
CAG
[ENA]
¡û
>WENV170089774
CEAF01018681
[CEAF] gut metagenome; human stools
2540
2454
-
Leu
CAG
[ENA]
¡û
>WENV170090813
CEAF01059591
[CEAF] gut metagenome; human stools
88
2
-
Leu
CAG
[ENA]
¡û
>WENV170091025
CEAF01067836
[CEAF] gut metagenome; human stools
3478
3392
-
Leu
CAG
[ENA]
¡û
>WENV170091026
CEAF01067836
[CEAF] gut metagenome; human stools
88
2
-
Leu
CAG
[ENA]
¡û
>WENV170091568
CEAG01015933
[CEAG] gut metagenome; human stools
88
2
-
Leu
CAG
[ENA]
¡û
>WENV170092112
CEAG01035541
[CEAG] gut metagenome; human stools
359
273
-
Leu
CAG
[ENA]
¡û
>C181081059
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2843388
2843474
+
Leu
CAG
-
¡û
>C191045066
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
3943549
3943463
-
Leu
CAG
-
¡û
>W141731356
JNJA01000007
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
80669
80583
-
Leu
CAG
[ENA]
¡û
>W1910020660
BDUJ01000001
Thermodesulfobacteriota
Desulfovibrio sp. HK-II [BDUJ]
474617
474531
-
Leu
CAG
[ENA]
¡û
>W1910020682
BDUJ01000003
Thermodesulfobacteriota
Desulfovibrio sp. HK-II [BDUJ]
362876
362962
+
Leu
CAG
[ENA]
¡û
>C09103828
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
480778
480864
+
Leu
CAG
[Ensembl]
¡û
>C09104382
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
2159345
2159431
+
Leu
CAG
[Ensembl]
¡û
>W2010078652
BDUJ01000001
Thermodesulfobacteriota
Desulfovibrio sp. HK-II [BDUJ]
474617
474531
-
Leu
CAG
[ENA]
¡û
>W2010078674
BDUJ01000003
Thermodesulfobacteriota
Desulfovibrio sp. HK-II [BDUJ]
362876
362962
+
Leu
CAG
[ENA]
¡û
>W2010492342
JAAKEJ010000001
Thermodesulfobacteriota
Desulfovibrio sp. ZJ209 [JAAKEJ]
579369
579455
+
Leu
CAG
[ENA]
¡û
>W2010492392
JAAKEK010000001
Thermodesulfobacteriota
Desulfovibrio sp. ZJ746 [JAAKEK]
579369
579455
+
Leu
CAG
[ENA]
¡û
>W2011483462
RQYH01000093
Thermodesulfobacteriota
Desulfovibrio sp. OH1186_COT-070 [RQYH]
920
1006
+
Leu
CAG
[ENA]
¡û
>W2011520258
RZTW01000074
Thermodesulfobacteriota
Desulfovibrio sp. DS-1 [RZTW]
10545
10631
+
Leu
CAG
[ENA]
¡û
>W2012131639
VSMK01000028
Thermodesulfobacteriota
Desulfovibrio sp. XJ01 [VSMK]
6685
6771
+
Leu
CAG
[ENA]
¡û
>W2012468798
WVUD01000005
Thermodesulfobacteriota
Desulfovibrio aerotolerans DSM 16695 [WVUD]
64358
64272
-
Leu
CAG
[ENA]
¡û
>W2110225123
JACJLW010000011
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
15708
15794
+
Leu
CAG
[ENA]
¡û
>W2110225135
JACJLW010000027
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
35299
35385
+
Leu
CAG
[ENA]
¡û
>W2110225155
JACJLW010000100
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
106
20
-
Leu
CAG
[ENA]
¡û
>W2110691008
JAIOTY010000002
Thermodesulfobacteriota
Cupidesulfovibrio sp. SRB-5 [JAIOTY]
234503
234417
-
Leu
CAG
[ENA]
¡û
>C211310712
CP072608
Thermodesulfobacteriota
Desulfovibrio desulfuricans L4 [CP072608]
2479579
2479665
+
Leu
CAG
-
¡û
>W2110726491
JAJCIJ010000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans DFI.2.30 [JAJCIJ]
331361
331447
+
Leu
CAG
[ENA]
¡û
>W2110730645
JAJCNP010000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans DFI.2.73 [JAJCNP]
64919
64833
-
Leu
CAG
[ENA]
¡û
>C211424282
LT984798
Thermodesulfobacteriota
Desulfovibrio sp. G11 [LT984798]
837565
837479
-
Leu
CAG
-
¡û
>W10112662
ADFE01000019
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
62465
62551
+
Leu
CAG
[ENA]
¡û
>W2110777220
VRYY01000310
Thermodesulfobacteriota
Cupidesulfovibrio oxamicus NCIMB 9442 [VRYY]
2454
2540
+
Leu
CAG
[ENA]
¡û
>W2130014267
JACJLW010000208
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
198
112
-
Leu
CAG
[ENA]
¡û
>C241311577
CP133659
Thermodesulfobacteriota
Nitratidesulfovibrio liaohensis KPS [CP133659]
2315192
2315278
+
Leu
CAG
-
¡û
>C241390251
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
2589562
2589476
-
Leu
CAG
-
¡û
>C241390281
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
571992
571906
-
Leu
CAG
-
¡û
>C241390282
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
567876
567790
-
Leu
CAG
-
¡û
>W11115893
ADFE02000003
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
62465
62551
+
Leu
CAG
[ENA]
¡û
>W1511365637
JSEH01000008
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
110858
110772
-
Leu
CAG
[ENA]
¡û
>W11178809
AGFG01000028
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
50485
50571
+
Leu
CAG
[ENA]
¡û
>W11178824
AGFG01000039
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
59656
59742
+
Leu
CAG
[ENA]
¡û
>W121036503
AHMC01000029
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
83295
83209
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK