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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.686327 (61 seq.)
>W1711055461
LRUW01000032
Campylobacterota
Aliarcobacter skirrowii [LRUW]
43
117
+
Gln
TTG
[ENA]
¡û
>W1711055471
LRUW01000046
Campylobacterota
Aliarcobacter skirrowii [LRUW]
116122
116196
+
Gln
TTG
[ENA]
¡û
>W1711055472
LRUW01000047
Campylobacterota
Aliarcobacter skirrowii [LRUW]
121261
121335
+
Gln
TTG
[ENA]
¡û
>W1711055493
LRUX01000019
Campylobacterota
Aliarcobacter skirrowii [LRUX]
34170
34096
-
Gln
TTG
[ENA]
¡û
>W1711055500
LRUX01000030
Campylobacterota
Aliarcobacter skirrowii [LRUX]
84316
84390
+
Gln
TTG
[ENA]
¡û
>W1711055523
LRUY01000060
Campylobacterota
Aliarcobacter skirrowii [LRUY]
2
76
+
Gln
TTG
[ENA]
¡û
>W1711055533
LRUY01000072
Campylobacterota
Aliarcobacter skirrowii [LRUY]
50895
50969
+
Gln
TTG
[ENA]
¡û
>W1711055539
LRUY01000081
Campylobacterota
Aliarcobacter skirrowii [LRUY]
96971
97045
+
Gln
TTG
[ENA]
¡û
>W1711055567
LRUZ01000036
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
87078
87152
+
Gln
TTG
[ENA]
¡û
>W1711055570
LRUZ01000039
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
116974
117048
+
Gln
TTG
[ENA]
¡û
>WENV170656675
JTFO01032631
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
18
92
+
Gln
TTG
[ENA]
¢þ
>WENV170658142
JTFP01058968
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
604
678
+
Gln
TTG
[ENA]
¢þ
>WENV170686006
LFRM01121424
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2815
2889
+
Gln
TTG
[ENA]
¢þ
>WENV170689724
LFRM01308482
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
159
85
-
Gln
TTG
[ENA]
¢þ
>WENV170721009
LSQX01175751
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2844
2770
-
Gln
TTG
[ENA]
¢þ
>C191084426
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
1864128
1864202
+
Gln
TTG
-
¡û
>C191084451
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2198220
2198146
-
Gln
TTG
-
¡û
>C191084558
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1483800
1483726
-
Gln
TTG
-
¡û
>C191084564
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
983954
983880
-
Gln
TTG
-
¡û
>C191084568
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
570839
570765
-
Gln
TTG
-
¡û
>C191122835
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1346032
1345958
-
Gln
TTG
-
¡û
>C191122841
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
912803
912729
-
Gln
TTG
-
¡û
>C191122845
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
533152
533078
-
Gln
TTG
-
¡û
>W1911426126
NXIC01000001
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
123917
123991
+
Gln
TTG
[ENA]
¡û
>W1911426154
NXIC01000004
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
91503
91429
-
Gln
TTG
[ENA]
¡û
>W1911426163
NXIC01000006
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
30930
31004
+
Gln
TTG
[ENA]
¡û
>W1911426317
NXIG01000004
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
205493
205419
-
Gln
TTG
[ENA]
¡û
>W1911426338
NXIG01000010
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
53509
53435
-
Gln
TTG
[ENA]
¡û
>W1911426445
NXII01000025
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
25003
25077
+
Gln
TTG
[ENA]
¡û
>W1911576106
PDJT01000022
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
37253
37179
-
Gln
TTG
[ENA]
¡û
>W1911576120
PDJT01000055
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
24581
24507
-
Gln
TTG
[ENA]
¡û
>W1911576412
PDJZ01000013
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
59165
59239
+
Gln
TTG
[ENA]
¡û
>W1911576423
PDJZ01000016
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
2652
2578
-
Gln
TTG
[ENA]
¡û
>W1911576693
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
121523
121597
+
Gln
TTG
[ENA]
¡û
>W1911576708
PDKH01000002
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
251074
251148
+
Gln
TTG
[ENA]
¡û
>W1911576730
PDKH01000006
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
38647
38573
-
Gln
TTG
[ENA]
¡û
>W1911748916
QWFD01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
104005
103931
-
Gln
TTG
[ENA]
¡û
>W1911748929
QWFD01000005
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
122666
122740
+
Gln
TTG
[ENA]
¡û
>W1911748937
QWFD01000007
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
38871
38797
-
Gln
TTG
[ENA]
¡û
>W1911748958
QWFE01000002
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
104005
103931
-
Gln
TTG
[ENA]
¡û
>W1911748971
QWFE01000005
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
122666
122740
+
Gln
TTG
[ENA]
¡û
>W1911748979
QWFE01000007
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
38871
38797
-
Gln
TTG
[ENA]
¡û
>W1810584093
QEYG01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
34305
34231
-
Gln
TTG
[ENA]
¡û
>W1810584105
QEYG01000034
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
977
903
-
Gln
TTG
[ENA]
¡û
>W1810584108
QEYG01000037
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
12019
11945
-
Gln
TTG
[ENA]
¡û
>W1810584138
QEYH01000002
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
104005
103931
-
Gln
TTG
[ENA]
¡û
>W1810584151
QEYH01000005
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
122666
122740
+
Gln
TTG
[ENA]
¡û
>W1810584159
QEYH01000007
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
38871
38797
-
Gln
TTG
[ENA]
¡û
>W1810584191
QEYI01000003
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
14108
14034
-
Gln
TTG
[ENA]
¡û
>W1810584193
QEYI01000004
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
128851
128925
+
Gln
TTG
[ENA]
¡û
>W1810584202
QEYI01000008
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
33030
32956
-
Gln
TTG
[ENA]
¡û
>W1610896507
LRUW01000032
Campylobacterota
Aliarcobacter skirrowii [LRUW]
43
117
+
Gln
TTG
[ENA]
¡û
>W1610896517
LRUW01000046
Campylobacterota
Aliarcobacter skirrowii [LRUW]
116122
116196
+
Gln
TTG
[ENA]
¡û
>W1610896518
LRUW01000047
Campylobacterota
Aliarcobacter skirrowii [LRUW]
121261
121335
+
Gln
TTG
[ENA]
¡û
>W1610896539
LRUX01000019
Campylobacterota
Aliarcobacter skirrowii [LRUX]
34170
34096
-
Gln
TTG
[ENA]
¡û
>W1610896546
LRUX01000030
Campylobacterota
Aliarcobacter skirrowii [LRUX]
84316
84390
+
Gln
TTG
[ENA]
¡û
>W1610896569
LRUY01000060
Campylobacterota
Aliarcobacter skirrowii [LRUY]
2
76
+
Gln
TTG
[ENA]
¡û
>W1610896579
LRUY01000072
Campylobacterota
Aliarcobacter skirrowii [LRUY]
50895
50969
+
Gln
TTG
[ENA]
¡û
>W1610896585
LRUY01000081
Campylobacterota
Aliarcobacter skirrowii [LRUY]
96971
97045
+
Gln
TTG
[ENA]
¡û
>W1610896613
LRUZ01000036
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
87078
87152
+
Gln
TTG
[ENA]
¡û
>W1610896616
LRUZ01000039
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
116974
117048
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK