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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68887 (14 seq.)
>WENV181222925
OFDC01000679
[OFDC] hot springs metagenome; Water
8969
9055
+
Leu
GAG
[ENA]
¡û
>WENV181285414
OFGS01000223
[OFGS] hot springs metagenome; Water and soil
9762
9845
+
Leu
GAG
[ENA]
¡û
>WENV181404388
OGCA01001550
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
2440
2354
-
Leu
GAG
[ENA]
¡û
>WENV181404440
OGCA01003911
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
193
279
+
Leu
GAG
[ENA]
¡û
>WENV181405169
OGCB01020939
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
192
278
+
Leu
GAG
[ENA]
¡û
>WENV170574269
FLYM01019962
[FLYM] hot springs metagenome; Sediment
10371
10457
+
Leu
GAG
[ENA]
¡û
>W141730200
JNIE01000002
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
359509
359423
-
Leu
GAG
[ENA]
¡û
>C141011682
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1120140
1120226
+
Leu
GAG
-
¡û
>W1911493366
OBEN01000005
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
40131
40045
-
Leu
GAG
[ENA]
¡û
>W2011154317
OBEN01000005
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
40131
40045
-
Leu
GAG
[ENA]
¡û
>C211344128
CP076323
Aquificota
Hydrogenobacter thermophilus [CP076323]
52525
52439
-
Leu
GAG
-
¡û
>C211344129
CP076324
Aquificota
Aquificae bacterium [CP076324]
78423
78509
+
Leu
GAG
-
¡û
>C10107851
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
757117
757203
+
Leu
GAG
-
¡û
>C11111324
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
757108
757194
+
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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