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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.733049 (118 seq.)
>W1710796591
LJSF01000041
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
110981
110907
-
Val
CAC
[ENA]
¡û
>W1710797318
LJSY01000049
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
16015
15941
-
Val
CAC
[ENA]
¡û
>W1710890966
LNCI01000006
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
264145
264071
-
Val
CAC
[ENA]
¡û
>W1710922274
LOAS01000019
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
74729
74803
+
Val
CAC
[ENA]
¡û
>W1711585231
MNZL01000155
Alphaproteobacteria
Rhodobacterales bacterium CG2_30_65_12 [MNZL]
4382
4456
+
Val
CAC
[ENA]
¡û
>W131214674
ATUJ01000011
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
8883
8809
-
Val
CAC
[ENA]
¡û
>w014845
AAOT01000011
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
60291
60367
+
Val
CAC
[ENA]
¡û
>w012773
AAMT01000004
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
246023
246097
+
Val
CAC
[ENA]
¡û
>WENV180103658
OAPA01110638
[OAPA] marine metagenome; ENVO:00002010
36
110
+
Val
CAC
[ENA]
¡û
>WENV180368636
OBOF01168284
[OBOF] marine metagenome; ENVO:00002010
264
338
+
Val
CAC
[ENA]
¡û
>WENV181120496
OEFK01005220
[OEFK] marine metagenome; ENVO:00002010 seawater
394
468
+
Val
CAC
[ENA]
¡û
>WENV181233811
OFET01000117
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
10500
10574
+
Val
CAC
[ENA]
¡û
>WENV181234055
OFET01001507
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
3304
3378
+
Val
CAC
[ENA]
¡û
>WENV181234491
OFEU01000214
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
48177
48103
-
Val
CAC
[ENA]
¡û
>WENV181234627
OFEU01000711
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
10477
10551
+
Val
CAC
[ENA]
¡û
>W141284828
JAME01000033
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
683
609
-
Val
CAC
[ENA]
¡û
>WENV183709627
PDWI01031189
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
316
390
+
Val
CAC
[ENA]
¡û
>WENV183710879
PDWI01055349
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2379
2453
+
Val
CAC
[ENA]
¡û
>WENV183712283
PDWI01094621
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1543
1615
+
Val
CAC
[ENA]
¡û
>WENV183715258
PDWI01229938
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2572
2498
-
Val
CAC
[ENA]
¡û
>WENV183717336
PDWJ01000754
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
36873
36947
+
Val
CAC
[ENA]
¡û
>WENV183720736
PDWJ01043234
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2358
2430
+
Val
CAC
[ENA]
¡û
>WENV170229335
CEQG01106415
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
203
277
+
Val
CAC
[ENA]
¡û
>WENV170635384
JDSF01008966
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
461
387
-
Val
CAC
[ENA]
¡û
>WENV170975252
MTKY01099255
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1554
1480
-
Val
CAC
[ENA]
¡û
>W09132534
ACNW01000073
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
27231
27305
+
Val
CAC
[ENA]
¡û
>C181081670
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
2419528
2419454
-
Val
CAC
-
¡û
>C191127866
CP034588
Alphaproteobacteria
Silicimonas algicola KC90 [CP034588]
2675599
2675525
-
Val
CAC
-
¡û
>W1910499761
FXYF01000002
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
356676
356602
-
Val
CAC
[ENA]
¡û
>W1910548985
FZOY01000001
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
793354
793428
+
Val
CAC
[ENA]
¡û
>W1910549350
FZPF01000004
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
156062
155988
-
Val
CAC
[ENA]
¡û
>W1911081217
NMZM01000004
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
270154
270228
+
Val
CAC
[ENA]
¡û
>W1911239559
NSDV01000010
Alphaproteobacteria
Rhodobacteraceae bacterium La 6 [NSDV]
938297
938223
-
Val
CAC
[ENA]
¡û
>W1911538457
OMOJ01000004
Alphaproteobacteria
Primorskyibacter insulae CECT 8871 [OMOJ]
127877
127803
-
Val
CAC
[ENA]
¡û
>W1911538641
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
945223
945297
+
Val
CAC
[ENA]
¡û
>W1911696508
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
204565
204491
-
Val
CAC
[ENA]
¡û
>W1911696539
QMEK01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
340588
340662
+
Val
CAC
[ENA]
¡û
>W1911813221
QZEV01000156
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
1527
1453
-
Val
CAC
[ENA]
¡û
>W1810351355
PVEP01000001
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
684600
684526
-
Val
CAC
[ENA]
¡û
>W1810364310
PVTD01000001
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
258347
258421
+
Val
CAC
[ENA]
¡û
>W1810464051
QAAA01000026
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
20283
20357
+
Val
CAC
[ENA]
¡û
>W1810594722
QGDJ01000017
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
55559
55485
-
Val
CAC
[ENA]
¡û
>W1810596835
QGGV01000002
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
197766
197840
+
Val
CAC
[ENA]
¡û
>W1810596872
QGGW01000001
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
788849
788775
-
Val
CAC
[ENA]
¡û
>W1810672112
QJTE01000004
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
2034
1960
-
Val
CAC
[ENA]
¡û
>W1810684482
QKYL01000062
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
8906
8980
+
Val
CAC
[ENA]
¡û
>W1810761108
QPLJ01000010
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
531
457
-
Val
CAC
[ENA]
¡û
>W2010419464
FXYF01000002
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
356676
356602
-
Val
CAC
[ENA]
¡û
>W2010430746
FZOY01000001
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
793354
793428
+
Val
CAC
[ENA]
¡û
>W2010431111
FZPF01000004
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
156062
155988
-
Val
CAC
[ENA]
¡û
>W2010459132
JAAFZC010000001
Alphaproteobacteria
Pseudooceanicola sp. E2-1 [JAAFZC]
2532167
2532241
+
Val
CAC
[ENA]
¡û
>W2010489525
JAAJBD010000001
Alphaproteobacteria
Boseongicola sp. TAW-CT132 [JAAJBD]
1324359
1324285
-
Val
CAC
[ENA]
¡û
>W2010569588
JAATOS010000296
Alphaproteobacteria
Salipiger sp. HF18 [JAATOS]
4516
4590
+
Val
CAC
[ENA]
¡û
>W2011005908
NMZM01000004
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
270154
270228
+
Val
CAC
[ENA]
¡û
>W2011066154
NSDV01000010
Alphaproteobacteria
Rhodobacteraceae bacterium La 6 [NSDV]
938297
938223
-
Val
CAC
[ENA]
¡û
>W2011168687
OMOJ01000004
Alphaproteobacteria
Primorskyibacter insulae CECT 8871 [OMOJ]
127877
127803
-
Val
CAC
[ENA]
¡û
>W2011168871
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
945223
945297
+
Val
CAC
[ENA]
¡û
>W2011276173
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
204565
204491
-
Val
CAC
[ENA]
¡û
>W2011276204
QMEK01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
340588
340662
+
Val
CAC
[ENA]
¡û
>W2011347491
QZEV01000156
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
1527
1453
-
Val
CAC
[ENA]
¡û
>W2011411093
RDRB01000001
Alphaproteobacteria
Rhodobacteraceae bacterium B17 [RDRB]
504034
503960
-
Val
CAC
[ENA]
¡û
>W2011555371
SELO01000037
Alphaproteobacteria
Tropicimonas sp. IMCC6043 [SELO]
1651
1725
+
Val
CAC
[ENA]
¡û
>W2011555374
SELO01000069
Alphaproteobacteria
Tropicimonas sp. IMCC6043 [SELO]
336
262
-
Val
CAC
[ENA]
¡û
>W2011706689
SWKQ01000011
Alphaproteobacteria
Maritimibacter sp. LZ-17 [SWKQ]
741704
741778
+
Val
CAC
[ENA]
¡û
>W2011804997
UETC01000017
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [UETC]
55559
55485
-
Val
CAC
[ENA]
¡û
>W2012015014
VFFF01000001
Alphaproteobacteria
Rhodobacteraceae bacterium SM1903 [VFFF]
314343
314417
+
Val
CAC
[ENA]
¡û
>W2012097137
VNHV01000003
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [VNHV]
579683
579757
+
Val
CAC
[ENA]
¡û
>W2012098681
VNKR01000007
Alphaproteobacteria
Pseudoruegeria sp. M32A2M [VNKR]
63226
63152
-
Val
CAC
[ENA]
¡û
>W2012106106
VOPH01000004
Alphaproteobacteria
Pseudooceanicola sp. CAU 1508 [VOPH]
357304
357378
+
Val
CAC
[ENA]
¡û
>W2012130718
VSIY01000006
Alphaproteobacteria
Boseongicola sp. HY14 [VSIY]
149966
150040
+
Val
CAC
[ENA]
¡û
>W2110023812
BMGI01000002
Alphaproteobacteria
Maritimibacter lacisalsi CGMCC 1.12922 [BMGI]
418692
418618
-
Val
CAC
[ENA]
¡û
>W2110070219
BPFG01000005
Alphaproteobacteria
Jannaschia sp. AI_61 [BPFG]
257202
257128
-
Val
CAC
[ENA]
¡û
>W2110070262
BPFH01000005
Alphaproteobacteria
Jannaschia sp. AI_62 [BPFH]
257169
257095
-
Val
CAC
[ENA]
¡û
>W2110423487
JAEKJU010000019
Alphaproteobacteria
Salipiger thiooxidans SY-1-11 [JAEKJU]
74110
74184
+
Val
CAC
[ENA]
¡û
>W2110471260
JAFCAR010000004
Alphaproteobacteria
Jannaschia sp. Os4 [JAFCAR]
447491
447417
-
Val
CAC
[ENA]
¡û
>W2110570267
JAGSOU010000031
Alphaproteobacteria
Actibacterium sp. MT2.3-13A [JAGSOU]
435
361
-
Val
CAC
[ENA]
¡û
>W2110575105
JAGTUU010000003
Alphaproteobacteria
Aestuariicoccus sp. KMU-90 [JAGTUU]
442223
442297
+
Val
CAC
[ENA]
¡û
>W2110650603
JAHUZF010000006
Alphaproteobacteria
Maritimibacter sp. DP1N21-5 [JAHUZF]
912143
912217
+
Val
CAC
[ENA]
¡û
>W2110663949
JAHYSR010000014
Alphaproteobacteria
Paracoccus bogoriensis BOG6 [JAHYSR]
65608
65534
-
Val
CAC
[ENA]
¡û
>W2110700724
JAIUZF010000031
Alphaproteobacteria
Salipiger thiooxidans DP5Y115-2 [JAIUZF]
67143
67217
+
Val
CAC
[ENA]
¡û
>W2110705762
JAIVLS010000014
Alphaproteobacteria
Salipiger thiooxidans DP6Y115-3 [JAIVLS]
81747
81673
-
Val
CAC
[ENA]
¡û
>C211201326
CP065161
Alphaproteobacteria
Rhodobacterales bacterium HKCCA1288 [CP065161]
270611
270685
+
Val
CAC
-
¡û
>C211216958
CP065915
Alphaproteobacteria
Pelagovum pacificum SM1903 [CP065915]
2045398
2045324
-
Val
CAC
-
¡û
>C231112684
CP067169
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [CP067169]
1008432
1008506
+
Val
CAC
-
¡û
>C231181592
CP083539
Alphaproteobacteria
Jannaschia sp. W003 [CP083539]
2041944
2041870
-
Val
CAC
-
¡û
>W2110751869
NHSD01000260
Alphaproteobacteria
Rhodobaculum claviforme LMG 28126 [NHSD]
1163
1237
+
Val
CAC
[ENA]
¡û
>W2110752106
NHSI01000047
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [NHSI]
2902
2828
-
Val
CAC
[ENA]
¡û
>C241010499
AP027266
Alphaproteobacteria
Roseicyclus marinus Dej080120_10 [AP027266]
1379173
1379247
+
Val
CAC
-
¡û
>W2110802744
WVSG01000001
Alphaproteobacteria
Rhodobacterales bacterium FZCC0069 [WVSG]
1703566
1703492
-
Val
CAC
[ENA]
¡û
>W2110802794
WVSH01000003
Alphaproteobacteria
Rhodobacterales bacterium HKCCA1058 [WVSH]
128938
129012
+
Val
CAC
[ENA]
¡û
>W2110802810
WVSI01000001
Alphaproteobacteria
Rhodobacterales bacterium FZCC0188 [WVSI]
690069
690143
+
Val
CAC
[ENA]
¡û
>W2110802857
WVSJ01000002
Alphaproteobacteria
Rhodobacterales bacterium HKCCA1065 [WVSJ]
162416
162342
-
Val
CAC
[ENA]
¡û
>W2110802919
WVSK01000003
Alphaproteobacteria
Rhodobacterales bacterium HKCCD6035 [WVSK]
64835
64761
-
Val
CAC
[ENA]
¡û
>W2110802967
WVSL01000034
Alphaproteobacteria
Rhodobacterales bacterium HKCCE2091 [WVSL]
10833
10907
+
Val
CAC
[ENA]
¡û
>W2110803020
WVSN01000003
Alphaproteobacteria
Rhodobacterales bacterium HKCCE3408 [WVSN]
236042
236116
+
Val
CAC
[ENA]
¡û
>W2110803072
WVSO01000027
Alphaproteobacteria
Rhodobacterales bacterium HKCCSP123 [WVSO]
30014
30088
+
Val
CAC
[ENA]
¡û
>W2110803113
WVSP01000002
Alphaproteobacteria
Rhodobacterales bacterium LSUCC0031 [WVSP]
404521
404595
+
Val
CAC
[ENA]
¡û
>W2110803219
WVSS01000001
Alphaproteobacteria
Rhodobacterales bacterium LSUCC1028 [WVSS]
217346
217420
+
Val
CAC
[ENA]
¡û
>W2310019461
BROH01000004
Alphaproteobacteria
Sinisalibacter aestuarii B-399 [BROH]
92221
92295
+
Val
CAC
[ENA]
¡û
>WENV038916
AACY021971153
Marine microbial communities from Global Ocean Sampling (GOS)
708
634
-
Val
CAC
[ENA]
>W1511524558
JYFE01000041
Alphaproteobacteria
Jannaschia aquimarina GSW-M26 [JYFE]
103877
103803
-
Val
CAC
[ENA]
¡û
>W1610091954
CXPG01000017
Alphaproteobacteria
Jannaschia rubra [CXPG]
146844
146918
+
Val
CAC
[ENA]
¡û
>W1610092496
CYPR01000185
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
73913
73987
+
Val
CAC
[ENA]
¡û
>W1610660548
LJSF01000041
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
110981
110907
-
Val
CAC
[ENA]
¡û
>W1610661275
LJSY01000049
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
16015
15941
-
Val
CAC
[ENA]
¡û
>W1610751362
LNCI01000006
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
264145
264071
-
Val
CAC
[ENA]
¡û
>W1610779753
LOAS01000019
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
74729
74803
+
Val
CAC
[ENA]
¡û
>W1710095311
CXPG01000017
Alphaproteobacteria
Jannaschia rubra [CXPG]
146844
146918
+
Val
CAC
[ENA]
¡û
>W1710095751
CYPR01000185
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
73913
73987
+
Val
CAC
[ENA]
¡û
>W1710508080
FMVT01000002
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
1559
1485
-
Val
CAC
[ENA]
¡û
>W1710514280
FNAV01000010
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
174747
174673
-
Val
CAC
[ENA]
¡û
>W1710519001
FNEK01000018
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
13132
13058
-
Val
CAC
[ENA]
¡û
>W1710530933
FNPF01000003
Alphaproteobacteria
Citreimonas salinaria [FNPF]
59146
59072
-
Val
CAC
[ENA]
¡û
>W1710557718
FOLG01000002
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
303490
303416
-
Val
CAC
[ENA]
¡û
>W1710557719
FOLG01000002
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
302927
302853
-
Val
CAC
[ENA]
¡û
>W1710562135
FOOS01000013
Alphaproteobacteria
Jannaschia rubra [FOOS]
30571
30497
-
Val
CAC
[ENA]
¡û
>W1710587494
FQYO01000002
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
459203
459277
+
Val
CAC
[ENA]
¡û
>W1710609107
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
48905
48831
-
Val
CAC
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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