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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.734245 (94 seq.)
>W1710809746
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
6154
6228
+
Gly
GCC
[ENA]
¡û
>W1710809755
LKEU01000017
Bacillota
Acetobacterium wieringae [LKEU]
78682
78756
+
Gly
GCC
[ENA]
¡û
>W1710926325
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58294
58220
-
Gly
GCC
[ENA]
¡û
>W1710926360
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1190
1264
+
Gly
GCC
[ENA]
¡û
>W1710926376
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
958
884
-
Gly
GCC
[ENA]
¡û
>W1711629258
MPOT01000079
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
40500
40426
-
Gly
GCC
[ENA]
¡û
>W1711629630
MPPE01000036
Bacillota
Tepidanaerobacter sp. EBM-49 [MPPE]
147944
147870
-
Gly
GCC
[ENA]
¡û
>WENV183513770
OMKS01007762
[OMKS] sediment metagenome; hot spring sediment
5368
5442
+
Gly
GCC
[ENA]
¡û
>WENV183705098
PDWI01001019
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
45312
45386
+
Gly
GCC
[ENA]
¡û
>WENV183705998
PDWI01002862
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25307
25381
+
Gly
GCC
[ENA]
¡û
>WENV183706520
PDWI01004545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
277
203
-
Gly
GCC
[ENA]
¡û
>WENV183706522
PDWI01004545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
24
-
Gly
GCC
[ENA]
¡û
>WENV183706765
PDWI01005437
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14600
14526
-
Gly
GCC
[ENA]
¡û
>WENV183706845
PDWI01005719
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3203
3277
+
Gly
GCC
[ENA]
¡û
>WENV183707064
PDWI01006561
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14312
14238
-
Gly
GCC
[ENA]
¡û
>WENV183707099
PDWI01006686
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
183
109
-
Gly
GCC
[ENA]
¡û
>WENV183707303
PDWI01007801
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2
76
+
Gly
GCC
[ENA]
¡û
>WENV183707431
PDWI01008381
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12032
11958
-
Gly
GCC
[ENA]
¡û
>WENV183707743
PDWI01010359
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1212
1138
-
Gly
GCC
[ENA]
¡û
>WENV183708212
PDWI01013901
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1148
1074
-
Gly
GCC
[ENA]
¡û
>WENV183708215
PDWI01013901
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
780
706
-
Gly
GCC
[ENA]
¡û
>WENV183708690
PDWI01018821
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6475
6401
-
Gly
GCC
[ENA]
¡û
>WENV183710471
PDWI01047299
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
185
111
-
Gly
GCC
[ENA]
¡û
>WENV183711027
PDWI01059227
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
104
178
+
Gly
GCC
[ENA]
¡û
>WENV183711768
PDWI01079863
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2587
2513
-
Gly
GCC
[ENA]
¡û
>WENV183711769
PDWI01079863
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2485
2411
-
Gly
GCC
[ENA]
¡û
>WENV183711803
PDWI01081014
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
104
178
+
Gly
GCC
[ENA]
¡û
>WENV183713033
PDWI01122223
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1682
1756
+
Gly
GCC
[ENA]
¡û
>WENV183713202
PDWI01128955
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1775
1701
-
Gly
GCC
[ENA]
¡û
>WENV183713450
PDWI01138982
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1606
1680
+
Gly
GCC
[ENA]
¡û
>WENV183714382
PDWI01181020
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20
94
+
Gly
GCC
[ENA]
¡û
>WENV183717474
PDWJ01000965
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
766
840
+
Gly
GCC
[ENA]
¡û
>WENV183717632
PDWJ01001256
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
95
21
-
Gly
GCC
[ENA]
¡û
>WENV183717836
PDWJ01001725
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
648
722
+
Gly
GCC
[ENA]
¡û
>WENV183717889
PDWJ01001878
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
45639
45565
-
Gly
GCC
[ENA]
¡û
>WENV183719240
PDWJ01010992
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6190
6264
+
Gly
GCC
[ENA]
¡û
>WENV183719427
PDWJ01014008
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
192
118
-
Gly
GCC
[ENA]
¡û
>WENV183720947
PDWJ01050270
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2005
2079
+
Gly
GCC
[ENA]
¡û
>WENV183721512
PDWJ01073250
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1457
1531
+
Gly
GCC
[ENA]
¡û
>WENV183722077
PDWJ01104429
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1263
1189
-
Gly
GCC
[ENA]
¡û
>WENV183722471
PDWJ01131654
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1036
962
-
Gly
GCC
[ENA]
¡û
>WENV170561530
CZCA01012806
[CZCA] anaerobic digester metagenome; anaerobic digester
5166
5240
+
Gly
GCC
[ENA]
¡û
>WENV170562467
CZCB01002978
[CZCB] anaerobic digester metagenome; anaerobic digester
10372
10298
-
Gly
GCC
[ENA]
¡û
>WENV170689775
LFRM01310959
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8728
8802
+
Gly
GCC
[ENA]
¡û
>WENV170690145
LFRM01326885
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
66218
66144
-
Gly
GCC
[ENA]
¡û
>WENV170719653
LSQX01122037
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29244
29170
-
Gly
GCC
[ENA]
¡û
>WENV170721953
LSQX01210723
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17264
17338
+
Gly
GCC
[ENA]
¡û
>WENV170727107
LSQX01404991
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
16712
16638
-
Gly
GCC
[ENA]
¡û
>WENV170968425
MTKW01009057
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2459
2385
-
Gly
GCC
[ENA]
¡û
>WENV170968501
MTKW01010239
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6383
6309
-
Gly
GCC
[ENA]
¡û
>WENV170969865
MTKW01042412
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
244
318
+
Gly
GCC
[ENA]
¡û
>W141561171
JHYF01000010
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
89739
89665
-
Gly
GCC
[ENA]
¡û
>W1911726622
QSNL01000022
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
15195
15121
-
Gly
GCC
[ENA]
¡û
>W1810721071
QNRS01000001
Bacillota
Garciella nitratireducens GHB3 [QNRS]
205459
205385
-
Gly
GCC
[ENA]
¡û
>C151024077
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
193917
193991
+
Gly
GCC
[Ensembl]
¡û
>C151024101
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
1860945
1860871
-
Gly
GCC
[Ensembl]
¡û
>W2011291815
QSNL01000022
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
15195
15121
-
Gly
GCC
[ENA]
¡û
>W2011697007
SUMG01000002
Bacillota
Isachenkonia alkalipeptolytica Z-1701 [SUMG]
259862
259788
-
Gly
GCC
[ENA]
¡û
>W2011697023
SUMG01000014
Bacillota
Isachenkonia alkalipeptolytica Z-1701 [SUMG]
69786
69712
-
Gly
GCC
[ENA]
¡û
>W2012131271
VSLA01000011
Bacillota
Acetobacterium wieringae JM [VSLA]
30909
30835
-
Gly
GCC
[ENA]
¡û
>W2012131283
VSLA01000013
Bacillota
Acetobacterium wieringae JM [VSLA]
468712
468786
+
Gly
GCC
[ENA]
¡û
>W2110074901
CABIIK010000034
Bacillota
Acetobacterium wieringae [CABIIK]
5084
5158
+
Gly
GCC
[ENA]
¡û
>W2110074917
CABIIK010000045
Bacillota
Acetobacterium wieringae [CABIIK]
429
355
-
Gly
GCC
[ENA]
¡û
>W2110461101
JAFBEE010000010
Bacillota
Alkaliphilus hydrothermalis DSM 25890 [JAFBEE]
25401
25475
+
Gly
GCC
[ENA]
¡û
>W2110588546
JAHBCL010000007
Bacillota
Fusibacter paucivorans DSM 12116 [JAHBCL]
852
926
+
Gly
GCC
[ENA]
¡û
>W2110588562
JAHBCL010000019
Bacillota
Fusibacter paucivorans DSM 12116 [JAHBCL]
96265
96191
-
Gly
GCC
[ENA]
¡û
>W2110588567
JAHBCL010000038
Bacillota
Fusibacter paucivorans DSM 12116 [JAHBCL]
35565
35491
-
Gly
GCC
[ENA]
¡û
>C211116893
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
2718314
2718388
+
Gly
GCC
-
¡û
>C211116930
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
445277
445203
-
Gly
GCC
-
¡û
>C211118804
CP059066
Bacillota
Koleobacter methoxysyntrophicus NRmbB1 [CP059066]
1927650
1927724
+
Gly
GCC
-
¡û
>C231248036
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
702786
702860
+
Gly
GCC
-
¡û
>C231248048
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
1180852
1180926
+
Gly
GCC
-
¡û
>C231395003
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
652798
652872
+
Gly
GCC
-
¡û
>C231395015
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
1144056
1144130
+
Gly
GCC
-
¡û
>C241063741
CP042243
Bacillota
Crassaminicella thermophila SY095 [CP042243]
1890883
1890809
-
Gly
GCC
-
¡û
>W2310021070
BSDN01000001
Bacillota
Tepidanaerobacter syntrophicus JE [BSDN]
21302
21376
+
Gly
GCC
[ENA]
¡û
>C11122566
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
722897
722971
+
Gly
GCC
[Ensembl]
¡û
>W1610061632
BCMU01000005
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
324921
324847
-
Gly
GCC
[ENA]
¡û
>C131020948
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
723464
723538
+
Gly
GCC
-
¡û
>W1610605141
LFRQ01000106
Bacillota
Clostridia bacterium DTU022 [LFRQ]
66218
66144
-
Gly
GCC
[ENA]
¡û
>W1610605914
LFSJ01000177
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
8728
8802
+
Gly
GCC
[ENA]
¡û
>W1610783818
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58294
58220
-
Gly
GCC
[ENA]
¡û
>W1610783853
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1190
1264
+
Gly
GCC
[ENA]
¡û
>W1610783869
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
958
884
-
Gly
GCC
[ENA]
¡û
>W1710059297
BCMU01000005
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
324921
324847
-
Gly
GCC
[ENA]
¡û
>W1710553656
FOHU01000009
Bacillota
Natronincola peptidivorans [FOHU]
144607
144533
-
Gly
GCC
[ENA]
¡û
>W1710553660
FOHU01000012
Bacillota
Natronincola peptidivorans [FOHU]
6850
6924
+
Gly
GCC
[ENA]
¡û
>W1710554117
FOIF01000006
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
54070
54144
+
Gly
GCC
[ENA]
¡û
>W1710554134
FOIF01000021
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
24407
24481
+
Gly
GCC
[ENA]
¡û
>W1710589647
FRAI01000013
Bacillota
Anaerobranca californiensis DSM 14826 [FRAI]
46589
46663
+
Gly
GCC
[ENA]
¡û
>W1710589657
FRAI01000016
Bacillota
Anaerobranca californiensis DSM 14826 [FRAI]
30976
31050
+
Gly
GCC
[ENA]
¡û
>W1710600850
FUWV01000004
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
83626
83552
-
Gly
GCC
[ENA]
¡û
>W1710726461
LFRQ01000106
Bacillota
Clostridia bacterium DTU022 [LFRQ]
66218
66144
-
Gly
GCC
[ENA]
¡û
>W1710727201
LFSJ01000177
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
8728
8802
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK