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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74159 (60 seq.)
>W1711066576
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
174337
174249
-
Ser
GGA
[ENA]
¡û
>W1711108821
LTUC01000043
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
33011
32923
-
Ser
GGA
[ENA]
¡û
>W1711517362
MLJM01000008
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
197766
197854
+
Ser
GGA
[ENA]
¡û
>W131159181
AQUV01000002
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
220419
220331
-
Ser
GGA
[ENA]
¡û
>WENV180765581
ODIC01000603
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
522
434
-
Ser
GGA
[ENA]
¢þ
>WENV180878609
ODLX01000710
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
2195
2283
+
Ser
GGA
[ENA]
¢þ
>WENV180984406
ODVG01000307
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
2593
2505
-
Ser
GGA
[ENA]
¢þ
>WENV181131647
OEGD01000204
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
4138
4226
+
Ser
GGA
[ENA]
¢þ
>WENV181212258
OFBN01001949
[OFBN] metagenome; hydrothermal vent
403
315
-
Ser
GGA
[ENA]
¢þ
>WENV181212332
OFBO01001048
[OFBO] metagenome; hydrothermal vent
731
819
+
Ser
GGA
[ENA]
¢þ
>WENV181212413
OFBP01001927
[OFBP] metagenome; hydrothermal vent
413
325
-
Ser
GGA
[ENA]
¢þ
>WENV181212486
OFBQ01001002
[OFBQ] metagenome; hydrothermal vent
353
441
+
Ser
GGA
[ENA]
¢þ
>WENV181212573
OFBR01001900
[OFBR] metagenome; hydrothermal vent
353
441
+
Ser
GGA
[ENA]
¢þ
>WENV181212733
OFBT01001927
[OFBT] metagenome; hydrothermal vent
403
315
-
Ser
GGA
[ENA]
¢þ
>W141243553
CAJP01000015
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
47908
47820
-
Ser
GGA
[ENA]
¡û
>WENV182629129
OJKR01007709
[OJKR] metagenome; surface
955
1043
+
Ser
GGA
[ENA]
¢þ
>WENV182636175
OJKZ01000732
[OJKZ] metagenome; surface
3231
3143
-
Ser
GGA
[ENA]
¢þ
>WENV182636258
OJKZ01001643
[OJKZ] metagenome; surface
6445
6357
-
Ser
GGA
[ENA]
¢þ
>WENV182640221
OJLB01001108
[OJLB] metagenome; surface
7457
7369
-
Ser
GGA
[ENA]
¢þ
>WENV182641764
OJLK01000113
[OJLK] metagenome; surface
416
504
+
Ser
GGA
[ENA]
¢þ
>WENV182643098
OJLS01000773
[OJLS] metagenome; surface
3680
3768
+
Ser
GGA
[ENA]
¢þ
>WENV182643883
OJLW01002082
[OJLW] metagenome; surface
3199
3287
+
Ser
GGA
[ENA]
¢þ
>WENV182643970
OJLW01004019
[OJLW] metagenome; surface
2028
1940
-
Ser
GGA
[ENA]
¢þ
>WENV182644231
OJLW01013955
[OJLW] metagenome; surface
954
1042
+
Ser
GGA
[ENA]
¢þ
>WENV182644831
OJLY01000524
[OJLY] metagenome; surface
12403
12491
+
Ser
GGA
[ENA]
¢þ
>WENV182645643
OJLZ01000218
[OJLZ] metagenome; surface
292
380
+
Ser
GGA
[ENA]
¢þ
>WENV182646421
OJMA01031149
[OJMA] metagenome; surface
564
476
-
Ser
GGA
[ENA]
¢þ
>WENV182803011
OJUH01000068
[OJUH] human gut metagenome; human gut
39682
39594
-
Ser
GGA
[ENA]
¢þ
>WENV182820809
OKAP01000267
[OKAP] human gut metagenome; human gut
352
440
+
Ser
GGA
[ENA]
¢þ
>WENV182830342
OKDX01010462
[OKDX] human gut metagenome; human gut
79
167
+
Ser
GGA
[ENA]
¢þ
>WENV182835521
OKFO01000055
[OKFO] human gut metagenome; human gut
12921
13009
+
Ser
GGA
[ENA]
¢þ
>WENV170685564
LFRM01098435
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
611
697
+
Ser
GGA
[ENA]
¢þ
>WENV170718740
LSQX01089402
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2594
2680
+
Ser
GGA
[ENA]
¢þ
>WENV170726701
LSQX01390615
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12602
12688
+
Ser
GGA
[ENA]
¢þ
>C181039057
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
124323
124237
-
Ser
GGA
-
¡û
>C181143912
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
149407
149319
-
Ser
GGA
-
¡û
>C181225906
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
250407
250495
+
Ser
GGA
-
¡û
>W09124069
ACHJ01000161
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
2620
2532
-
Ser
GGA
[ENA]
¡û
>C09103356
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
194036
193948
-
Ser
GGA
[Ensembl]
¡û
>W1911179000
NQMQ01000001
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
189242
189156
-
Ser
GGA
[ENA]
¡û
>W1911243350
NSGK01000013
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
26748
26836
+
Ser
GGA
[ENA]
¡û
>W1911243403
NSGL01000005
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
66591
66503
-
Ser
GGA
[ENA]
¡û
>W1911243452
NSGM01000004
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
314780
314866
+
Ser
GGA
[ENA]
¡û
>W1911243514
NSGN01000012
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
8322
8410
+
Ser
GGA
[ENA]
¡û
>W1911243554
NSGO01000007
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
121300
121388
+
Ser
GGA
[ENA]
¡û
>W1911243577
NSGP01000001
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
226051
226139
+
Ser
GGA
[ENA]
¡û
>W1911551207
OVSI01000007
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
9674
9762
+
Ser
GGA
[ENA]
¡û
>W1911596608
PNHH01000009
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
49455
49543
+
Ser
GGA
[ENA]
¡û
>W1810568919
QEEY01000011
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
55436
55348
-
Ser
GGA
[ENA]
¡û
>C151007297
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
178968
178882
-
Ser
GGA
[Ensembl]
¡û
>C151045489
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
168434
168522
+
Ser
GGA
[Ensembl]
¡û
>C151084472
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
199348
199260
-
Ser
GGA
[Ensembl]
¡û
>W1511523810
JYCR01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
75121
75033
-
Ser
GGA
[ENA]
¡û
>W1511523977
JYDD01000009
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
75074
74986
-
Ser
GGA
[ENA]
¡û
>W1610069809
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
84549
84635
+
Ser
GGA
[ENA]
¡û
>W1610436827
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
655671
655583
-
Ser
GGA
[ENA]
¡û
>W1610907146
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
174337
174249
-
Ser
GGA
[ENA]
¡û
>W1710067182
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
84549
84635
+
Ser
GGA
[ENA]
¡û
>W1710436563
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
655671
655583
-
Ser
GGA
[ENA]
¡û
>W1710608155
FXAR01000002
Actinomycetota
Corynebacterium pollutisoli [FXAR]
96458
96544
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK