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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.743620 (26 seq.)
>WENV180015743
FSTD01000097
[FSTD] metagenome; soil
3193
3119
-
Glu
TTC
[ENA]
¡û
>WENV180016342
FSUR01000314
[FSUR] metagenome; soil
1829
1755
-
Glu
TTC
[ENA]
¡û
>WENV180016564
FSVH01000231
[FSVH] metagenome; soil
32466
32392
-
Glu
TTC
[ENA]
¡û
>WENV180028796
FTJH01000629
[FTJH] metagenome; soil
6998
6924
-
Glu
TTC
[ENA]
¡û
>WENV180028797
FTJH01000629
[FTJH] metagenome; soil
6737
6663
-
Glu
TTC
[ENA]
¡û
>WENV180029310
FTJI01549731
[FTJI] metagenome; soil
118
44
-
Glu
TTC
[ENA]
¡û
>WENV180030644
FTJN01001926
[FTJN] metagenome; soil
3378
3452
+
Glu
TTC
[ENA]
¡û
>WENV180034826
FTKR01497780
[FTKR] metagenome; soil
118
44
-
Glu
TTC
[ENA]
¡û
>W141136722
AWGC01000011
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
48198
48272
+
Glu
TTC
[ENA]
¡û
>W141136774
AWGD01000021
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
93676
93750
+
Glu
TTC
[ENA]
¡û
>WENV170784071
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
108805
108731
-
Glu
TTC
[ENA]
¡û
>WENV170784072
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
108571
108497
-
Glu
TTC
[ENA]
¡û
>W1810594093
QFYR01000001
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
1184017
1184091
+
Glu
TTC
[ENA]
¡û
>W1810594115
QFYR01000003
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
66156
66230
+
Glu
TTC
[ENA]
¡û
>W1810594137
QFYS01000001
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
367048
367122
+
Glu
TTC
[ENA]
¡û
>W2010707671
JACHKY010000002
Alphaproteobacteria
Brevundimonas bullata S00123 [JACHKY]
744360
744286
-
Glu
TTC
[ENA]
¡û
>W2010707672
JACHKY010000002
Alphaproteobacteria
Brevundimonas bullata S00123 [JACHKY]
744126
744052
-
Glu
TTC
[ENA]
¡û
>W2010708451
JACHLM010000002
Alphaproteobacteria
Brevundimonas bullata S00223 [JACHLM]
744165
744091
-
Glu
TTC
[ENA]
¡û
>W2010708452
JACHLM010000002
Alphaproteobacteria
Brevundimonas bullata S00223 [JACHLM]
743931
743857
-
Glu
TTC
[ENA]
¡û
>W2110540630
JAGGMI010000002
Alphaproteobacteria
Asticcacaulis solisilvae BE327 [JAGGMI]
203040
203114
+
Glu
TTC
[ENA]
¡û
>C211159291
CP062222
Alphaproteobacteria
Brevundimonas goettingensis LVF2 [CP062222]
1156649
1156723
+
Glu
TTC
-
¡û
>C211159292
CP062222
Alphaproteobacteria
Brevundimonas goettingensis LVF2 [CP062222]
1156773
1156847
+
Glu
TTC
-
¡û
>C231566416
CP115464
Alphaproteobacteria
Brevundimonas sp. NIBR10 [CP115464]
2580922
2580996
+
Glu
TTC
-
¡û
>C231619723
CP119309
Alphaproteobacteria
Brevundimonas sp. [CP119309]
1660038
1659964
-
Glu
TTC
-
¡û
>C231619724
CP119309
Alphaproteobacteria
Brevundimonas sp. [CP119309]
1659803
1659729
-
Glu
TTC
-
¡û
>W11123394
ADUH01000251
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
38728
38654
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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