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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74575 (12 seq.)
>C171057474
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
441845
441757
-
Ser
TGA
-
¡û
>W131169221
AREO01000006
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
59757
59669
-
Ser
TGA
[ENA]
¡û
>WENV170691153
LFRM01382374
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1406
1494
+
Ser
TGA
[ENA]
¢þ
>WENV170717151
LSQX01025737
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
176
88
-
Ser
TGA
[ENA]
¢þ
>C181185416
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1646331
1646243
-
Ser
TGA
-
¡û
>C191108219
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
270334
270422
+
Ser
TGA
-
¡û
>C191122110
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
158304
158216
-
Ser
TGA
-
¡û
>C191211030
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
296792
296880
+
Ser
TGA
-
¡û
>W09128005
ACLK01000024
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
25442
25530
+
Ser
TGA
[ENA]
¡û
>C151007185
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1099569
1099481
-
Ser
TGA
[Ensembl]
¡û
>C11108878
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1579857
1579769
-
Ser
TGA
[Ensembl]
¡û
>C161078623
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
286651
286739
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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