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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74846 (35 seq.)
>C025645
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
846293
846381
+
Ser
CGA
-
¡û
>C025814
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
99636
99548
-
Ser
CGA
[Ensembl]
¡û
>W141082646
AUNF01000004
Thermotogota
Thermotoga sp. A7A [AUNF]
90232
90144
-
Ser
CGA
[ENA]
¡û
>WENV181407928
OGCH01000221
[OGCH] hot springs metagenome; hot springs
12787
12699
-
Ser
CGA
[ENA]
¢þ
>C08010925
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
99367
99282
-
Ser
CGA
[Ensembl]
¡û
>WENV170676162
LDZR01001286
[LDZR] terrestrial metagenome; oil reservoir sample K2
8503
8415
-
Ser
CGA
[ENA]
¢þ
>WENV170676776
LDZS01002228
[LDZS] terrestrial metagenome; oil reservoir sample K3
1000
912
-
Ser
CGA
[ENA]
¢þ
>W09106543
AAWB01000001
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
13592
13504
-
Ser
CGA
[ENA]
¡û
>W09107405
ABIJ01000002
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
24975
24887
-
Ser
CGA
[ENA]
¡û
>W09112206
ABXR01000002
Thermotogota
Marinitoga piezophila KA3 [ABXR]
250765
250853
+
Ser
CGA
[ENA]
¡û
>C141011556
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
99316
99228
-
Ser
CGA
-
¡û
>W1910635522
LNDE01000004
Thermotogota
Thermotoga sp. KOL6 [LNDE]
37526
37614
+
Ser
CGA
[ENA]
¡û
>C151004301
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
99387
99299
-
Ser
CGA
[Ensembl]
¡û
>C151004347
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
99361
99273
-
Ser
CGA
[Ensembl]
¡û
>C151074605
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
846306
846394
+
Ser
CGA
[Ensembl]
¡û
>C151076959
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
846306
846394
+
Ser
CGA
[Ensembl]
¡û
>C151077005
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
846306
846394
+
Ser
CGA
[Ensembl]
¡û
>W10105844
ACXW01000006
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
83784
83696
-
Ser
CGA
[ENA]
¡û
>C10113522
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
99322
99234
-
Ser
CGA
[Ensembl]
¡û
>W11108164
ACXW01000006
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
83784
83696
-
Ser
CGA
[ENA]
¡û
>W11180789
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
487215
487127
-
Ser
CGA
[ENA]
¡û
>W121062174
AJII01000003
Thermotogota
Thermotoga sp. EMP [AJII]
62935
63023
+
Ser
CGA
[ENA]
¡û
>C131012495
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
846307
846395
+
Ser
CGA
-
¡û
>W1610540338
JSFG01000011
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
90518
90430
-
Ser
CGA
[ENA]
¡û
>W1610540396
JSFH01000011
Thermotogota
Thermotoga sp. Mc24 [JSFH]
90426
90338
-
Ser
CGA
[ENA]
¡û
>W1610540430
JSFI01000008
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
90468
90380
-
Ser
CGA
[ENA]
¡û
>W1610540484
JSFJ01000013
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
43833
43921
+
Ser
CGA
[ENA]
¡û
>W1610612908
LGFG01000038
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8503
8415
-
Ser
CGA
[ENA]
¡û
>W1610613166
LGFM01000097
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1000
912
-
Ser
CGA
[ENA]
¡û
>W1710643359
JSFG01000011
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
90518
90430
-
Ser
CGA
[ENA]
¡û
>W1710643417
JSFH01000011
Thermotogota
Thermotoga sp. Mc24 [JSFH]
90426
90338
-
Ser
CGA
[ENA]
¡û
>W1710643451
JSFI01000008
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
90468
90380
-
Ser
CGA
[ENA]
¡û
>W1710643505
JSFJ01000013
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
43833
43921
+
Ser
CGA
[ENA]
¡û
>W1710734190
LGFG01000038
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8503
8415
-
Ser
CGA
[ENA]
¡û
>W1710734373
LGFM01000097
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1000
912
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK