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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.748639 (27 seq.)
>W1711411853
MGTP01000154
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_54_10 [MGTP]
4565
4639
+
Gln
TTG
[ENA]
¡û
>W1711414344
MGZJ01000050
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
7218
7143
-
Gln
TTG
[ENA]
¡û
>W1711414411
MGZL01000028
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
158372
158446
+
Gln
TTG
[ENA]
¡û
>W1711420773
MHXL01000140
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWB2_53_15 [MHXL]
4647
4573
-
Gln
TTG
[ENA]
¡û
>W1711420786
MHXM01000036
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWC2_58_13 [MHXM]
8836
8910
+
Gln
TTG
[ENA]
¡û
>C171039137
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
148557
148631
+
Gln
TTG
-
¡û
>C171039140
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
464614
464688
+
Gln
TTG
-
¡û
>W131186538
ARWE01000001
Thermodesulfobacteriota
Geopsychrobacter electrodiphilus DSM 16401 [ARWE]
1943696
1943622
-
Gln
TTG
[ENA]
¡û
>C010250
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
4309772
4309698
-
Gln
TTG
[Ensembl]
¡û
>C017465
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
778119
778193
+
Gln
TTG
[Ensembl]
¡û
>w004972
AAEW02000013
Thermodesulfobacteriota
Desulfuromonas acetoxidans DSM 684 [AAEW]
64690
64619
-
Gln
TTG
[ENA]
¡û
>WENV180584080
OCNO01021277
[OCNO] soil metagenome; Clay
225
151
-
Gln
TTG
[ENA]
¡û
>WENV181231130
OFEK01010607
[OFEK] activated sludge metagenome; Anaerobic digester
1248
1174
-
Gln
TTG
[ENA]
¡û
>WENV170006625
AMWB02038035
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1
75
+
Gln
TTG
[ENA]
¡û
>WENV170656832
JTFO01048724
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
449
523
+
Gln
TTG
[ENA]
¡û
>WENV170707311
LNAP01016982
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1347
1273
-
Gln
TTG
[ENA]
¡û
>W09103536
AAJH01000011
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
5631
5705
+
Gln
TTG
[ENA]
¡û
>W09105088
AAON01000080
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
363
437
+
Gln
TTG
[ENA]
¡û
>W1810486165
QAXR01000006
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
167921
167847
-
Gln
TTG
[ENA]
¡û
>W2010088591
BJBU01000003
Thermodesulfobacteriota
Geobacter sp. SVR [BJBU]
226886
226812
-
Gln
TTG
[ENA]
¡û
>W2010643448
JABWTF010000001
Thermodesulfobacteriota
Desulfuromonas acetoxidans DSM 1675 [JABWTF]
224985
224911
-
Gln
TTG
[ENA]
¡û
>W2010643508
JABWTG010000002
Thermodesulfobacteriota
Desulfuromonas acetoxidans DSM 1676 [JABWTG]
256376
256450
+
Gln
TTG
[ENA]
¡û
>W2110016130
BLJA01000001
Thermodesulfobacteriota
Geobacter sp. AOG2 [BLJA]
2317248
2317322
+
Gln
TTG
[ENA]
¡û
>W2110316030
JADGIJ010000001
Thermodesulfobacteriota
Desulfuromonas acetoxidans N3 [JADGIJ]
64909
64835
-
Gln
TTG
[ENA]
¡û
>C211020048
AP024469
Thermodesulfobacteriota
Geobacter sp. SVR [AP024469]
1573968
1573894
-
Gln
TTG
-
¡û
>C211290259
CP071382
Thermodesulfobacteriota
Geobacter sp. Jerry-YX [CP071382]
478783
478709
-
Gln
TTG
-
¡û
>C241066589
CP042466
Thermodesulfobacteriota
Geobacter sp. FeAm09 [CP042466]
1592850
1592776
-
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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