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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77009 (10 seq.)
>WENV181207720
OFAZ01021124
[OFAZ] metagenome; hydrothermal vent
96
182
+
Leu
CAG
[ENA]
¢þ
>WENV183747157
PPCM01000327
[PPCM] marine sediment metagenome; marine sediment
33923
34009
+
Leu
CAG
[ENA]
¢þ
>WENV183747217
PPCM01000437
[PPCM] marine sediment metagenome; marine sediment
29163
29249
+
Leu
CAG
[ENA]
¢þ
>WENV183747560
PPCM01005216
[PPCM] marine sediment metagenome; marine sediment
1502
1588
+
Leu
CAG
[ENA]
¢þ
>WENV170645456
JMSV01005995
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
132
46
-
Leu
CAG
[ENA]
¢þ
>C09104268
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
927185
927099
-
Leu
CAG
[Ensembl]
¡û
>C09104269
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
926943
926857
-
Leu
CAG
[Ensembl]
¡û
>C09104270
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
913752
913666
-
Leu
CAG
[Ensembl]
¡û
>C131018074
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
360584
360670
+
Leu
CAG
[Ensembl]
¡û
>C131018075
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
372682
372768
+
Leu
CAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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