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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.770216 (50 seq.)
>W1711091816
LTDM01000014
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
41417
41343
-
Asn
GTT
[ENA]
¡û
>W1711091840
LTDM01000035
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
7616
7542
-
Asn
GTT
[ENA]
¡û
>WENV180172468
OAVX01003903
[OAVX] human gut metagenome; faeces
110
184
+
Asn
GTT
[ENA]
¡û
>WENV180346052
OBLN01022644
[OBLN] sediment metagenome; sediment
1210
1136
-
Asn
GTT
[ENA]
¡û
>WENV180349746
OBLO01108219
[OBLO] metagenome; feces
149
75
-
Asn
GTT
[ENA]
¡û
>WENV180404083
OBRT01116664
[OBRT] human gut metagenome; ENVO:feces
49
123
+
Asn
GTT
[ENA]
¡û
>W141084949
AUQY01000002
Bacillota
Peptoniphilus mikwangii ChDC B134 [AUQY]
501824
501750
-
Asn
GTT
[ENA]
¡û
>W141084972
AUQY01000004
Bacillota
Peptoniphilus mikwangii ChDC B134 [AUQY]
801
727
-
Asn
GTT
[ENA]
¡û
>WENV182644307
OJLW01021369
[OJLW] metagenome; surface
516
442
-
Asn
GTT
[ENA]
¡û
>WENV182645476
OJLY01028456
[OJLY] metagenome; surface
280
206
-
Asn
GTT
[ENA]
¡û
>WENV183225323
OLQN01057454
[OLQN] human gut metagenome; faeces
532
606
+
Asn
GTT
[ENA]
¡û
>WENV183513636
OMKS01006487
[OMKS] sediment metagenome; hot spring sediment
1017
943
-
Asn
GTT
[ENA]
¡û
>WENV170015670
AZII01002271
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
438
512
+
Asn
GTT
[ENA]
¡û
>WENV170644153
JMBV01048317
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
174
100
-
Asn
GTT
[ENA]
¡û
>WENV170644476
JMBW01018281
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
517
591
+
Asn
GTT
[ENA]
¡û
>WENV170644509
JMBW01022141
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
31
105
+
Asn
GTT
[ENA]
¡û
>WENV170644579
JMBW01033021
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
52
126
+
Asn
GTT
[ENA]
¡û
>WENV170645255
JMBX01025858
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
52
126
+
Asn
GTT
[ENA]
¡û
>WENV170968411
MTKW01009056
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1182
1256
+
Asn
GTT
[ENA]
¡û
>C191213938
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
457581
457655
+
Asn
GTT
-
¡û
>C191213967
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
957290
957216
-
Asn
GTT
-
¡û
>W1910237760
FPLH01000007
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
2394
2468
+
Asn
GTT
[ENA]
¡û
>W1910237767
FPLH01000013
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
142002
142076
+
Asn
GTT
[ENA]
¡û
>W1910237792
FPLH01000014
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
149784
149710
-
Asn
GTT
[ENA]
¡û
>W1911498537
OCTU01000004
Bacillota
Urinacoccus sp. Marseille-P3926 [OCTU]
92723
92649
-
Asn
GTT
[ENA]
¡û
>C151102840
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
545150
545224
+
Asn
GTT
[Ensembl]
¡û
>C151102862
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
887286
887212
-
Asn
GTT
[Ensembl]
¡û
>W2010149645
CAACYI010000001
Bacillota
Anaerococcus prevotii 3012STDY7089603 [CAACYI]
1379500
1379426
-
Asn
GTT
[ENA]
¡û
>W2010149659
CAACYI010000001
Bacillota
Anaerococcus prevotii 3012STDY7089603 [CAACYI]
1031914
1031840
-
Asn
GTT
[ENA]
¡û
>W2010161530
CABDWR010000001
Bacillota
Peptoniphilus catoniae P8546 [CABDWR]
147
221
+
Asn
GTT
[ENA]
¡û
>W2010161541
CABDWR010000001
Bacillota
Peptoniphilus catoniae P8546 [CABDWR]
484501
484427
-
Asn
GTT
[ENA]
¡û
>W2010253560
CABJAE020000005
Bacillota
Peptoniphilaceae bacterium [CABJAE]
218
292
+
Asn
GTT
[ENA]
¡û
>W2010386969
FPLH01000007
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
2394
2468
+
Asn
GTT
[ENA]
¡û
>W2010386976
FPLH01000013
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
142002
142076
+
Asn
GTT
[ENA]
¡û
>W2010387001
FPLH01000014
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
149784
149710
-
Asn
GTT
[ENA]
¡û
>W2011159441
OCTU01000004
Bacillota
Urinacoccus sp. Marseille-P3926 [OCTU]
92723
92649
-
Asn
GTT
[ENA]
¡û
>W2110539765
JAGGLJ010000031
Bacillota
Peptoniphilus stercorisuis DSM 27563 [JAGGLJ]
422
496
+
Asn
GTT
[ENA]
¡û
>W10111028
ADCS01000032
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
3449
3523
+
Asn
GTT
[ENA]
¡û
>C231611793
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
1416179
1416253
+
Asn
GTT
-
¡û
>C231611824
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
3970212
3970138
-
Asn
GTT
-
¡û
>C231611845
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
2814450
2814376
-
Asn
GTT
-
¡û
>W11113754
ADCS01000032
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
3449
3523
+
Asn
GTT
[ENA]
¡û
>W11173967
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
644018
644092
+
Asn
GTT
[ENA]
¡û
>W11173986
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
1822994
1822920
-
Asn
GTT
[ENA]
¡û
>W1610095161
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
205
279
+
Asn
GTT
[ENA]
¡û
>W1610095201
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
590328
590254
-
Asn
GTT
[ENA]
¡û
>W1610506383
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
186163
186089
-
Asn
GTT
[ENA]
¡û
>W1710097956
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
205
279
+
Asn
GTT
[ENA]
¡û
>W1710097996
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
590328
590254
-
Asn
GTT
[ENA]
¡û
>W1710498886
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
186163
186089
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK