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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.793313 (16 seq.)
>WENV170686091
LFRM01125695
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
291
218
-
Gly
TCC
[ENA]
¢þ
>WENV170690437
LFRM01341493
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1507
1580
+
Gly
TCC
[ENA]
¢þ
>WENV170717197
LSQX01027435
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
41554
41627
+
Gly
TCC
[ENA]
¢þ
>C181049088
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1658293
1658220
-
Gly
TCC
-
¡û
>C181049953
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1641947
1641874
-
Gly
TCC
-
¡û
>C181049990
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1731055
1730982
-
Gly
TCC
-
¡û
>C181050027
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1627330
1627257
-
Gly
TCC
-
¡û
>C181050109
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1684044
1683971
-
Gly
TCC
-
¡û
>C191208076
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1693515
1693442
-
Gly
TCC
-
¡û
>W141562697
JHZJ01000011
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
639
566
-
Gly
TCC
[ENA]
¡û
>W1810701951
QMFX01000001
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
182520
182447
-
Gly
TCC
[ENA]
¡û
>W1511350708
JRMO01000009
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
2054
1981
-
Gly
TCC
[ENA]
¡û
>C11122627
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
640957
640884
-
Gly
TCC
[Ensembl]
¡û
>C121009939
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1724124
1724051
-
Gly
TCC
[Ensembl]
¡û
>W1610606567
LFTA01000082
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
291
218
-
Gly
TCC
[ENA]
¡û
>W1710727854
LFTA01000082
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
291
218
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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