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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80629 (120 seq.)
>W1710877367
LMQA01000002
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
95649
95564
-
Leu
CAG
[ENA]
¡û
>W1710877447
LMQC01000019
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
502291
502376
+
Leu
CAG
[ENA]
¡û
>W1711326357
MBFF02000597
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
702
787
+
Leu
CAG
[ENA]
¡û
>W1711502648
MKSW01000033
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
639563
639478
-
Leu
CAG
[ENA]
¡û
>W1711749185
MUMH01000073
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
77743
77828
+
Leu
CAG
[ENA]
¡û
>W1711766521
MUYM01000046
Actinomycetota
Lentzea kentuckyensis [MUYM]
20891
20809
-
Leu
CAG
[ENA]
¡û
>W1711792255
MWJN01000006
Actinomycetota
Microbispora sp. GKU 823 [MWJN]
67631
67546
-
Leu
CAG
[ENA]
¡û
>C171051020
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
2869739
2869657
-
Leu
CAG
-
¡û
>W131217677
ATXA01000015
Actinomycetota
Frankia sp. Iso899 [ATXA]
69232
69315
+
Leu
CAG
[ENA]
¡û
>W141135783
AWEV01000129
Actinomycetota
Microbispora sp. ATCC PTA-5024 [AWEV]
6728
6813
+
Leu
CAG
[ENA]
¡û
>WENV181401421
OFTX01000145
[OFTX] sludge metagenome; sludge
43391
43474
+
Leu
CAG
[ENA]
¢þ
>W141259322
CBYP010000056
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
18062
18145
+
Leu
CAG
[ENA]
¡û
>W141452103
JFBT01000001
Actinomycetota
Cryptosporangium arvum DSM 44712 [JFBT]
35707
35792
+
Leu
CAG
[ENA]
¡û
>WENV170981210
MWVT01042731
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
230
315
+
Leu
CAG
[ENA]
¢þ
>W141558007
JHVO01000016
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
124855
124770
-
Leu
CAG
[ENA]
¡û
>W141558051
JHVP01000013
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
33126
33041
-
Leu
CAG
[ENA]
¡û
>W09109041
ABTU01000010
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
146548
146465
-
Leu
CAG
[ENA]
¡û
>W09109487
ABUH01000001
Actinomycetota
Nakamurella multipartita DSM 44233 [ABUH]
437342
437425
+
Leu
CAG
[ENA]
¡û
>W141730450
JNII01000011
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
126955
127040
+
Leu
CAG
[ENA]
¡û
>W141730511
JNIK01000006
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
138046
137961
-
Leu
CAG
[ENA]
¡û
>W141759642
JNZM01000657
Actinomycetota
Microbispora rosea subsp. rosea [JNZM]
1986
2071
+
Leu
CAG
[ENA]
¡û
>W141759875
JNZQ01000031
Actinomycetota
Microbispora rosea subsp. nonnitritogenes [JNZQ]
80940
80855
-
Leu
CAG
[ENA]
¡û
>W141765907
JODQ01000009
Actinomycetota
Herbidospora cretacea [JODQ]
104831
104914
+
Leu
CAG
[ENA]
¡û
>W141766534
JOEA01000020
Actinomycetota
Lentzea albidocapillata [JOEA]
223826
223908
+
Leu
CAG
[ENA]
¡û
>W141766791
JOEF01000003
Actinomycetota
Allokutzneria albata [JOEF]
129819
129904
+
Leu
CAG
[ENA]
¡û
>W141768597
JOFI01000003
Actinomycetota
Lentzea aerocolonigenes [JOFI]
162963
162881
-
Leu
CAG
[ENA]
¡û
>W141771452
JOHE01000143
Actinomycetota
Lentzea aerocolonigenes [JOHE]
5414
5332
-
Leu
CAG
[ENA]
¡û
>W1910547173
FZNO01000015
Actinomycetota
Blastococcus mobilis DSM 44272 [FZNO]
110651
110566
-
Leu
CAG
[ENA]
¡û
>W1910548136
FZOH01000008
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
161456
161371
-
Leu
CAG
[ENA]
¡û
>W1910548507
FZOO01000005
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
135198
135115
-
Leu
CAG
[ENA]
¡û
>W1910646736
LWUA01000157
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
7106
7023
-
Leu
CAG
[ENA]
¡û
>W1911385145
NVPT01000040
Actinomycetota
Geodermatophilus chilensis B12 [NVPT]
8956
8873
-
Leu
CAG
[ENA]
¡û
>W1911492102
OBDO01000007
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
137406
137323
-
Leu
CAG
[ENA]
¡û
>W1911495769
OBQI01000008
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
99550
99465
-
Leu
CAG
[ENA]
¡û
>W1911497427
OCNK01000001
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
1265083
1265167
+
Leu
CAG
[ENA]
¡û
>W1810222162
POQT01000022
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
55522
55607
+
Leu
CAG
[ENA]
¡û
>W1810222207
POQU01000060
Actinomycetota
Blastococcus atacamensis P6 [POQU]
20114
20029
-
Leu
CAG
[ENA]
¡û
>W1810364474
PVTG01000012
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
9924
10008
+
Leu
CAG
[ENA]
¡û
>W1810533149
QCZF01000006
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
232272
232357
+
Leu
CAG
[ENA]
¡û
>W1810592236
QFWW01000037
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
168660
168578
-
Leu
CAG
[ENA]
¡û
>W1810594543
QFZU02000185
Actinomycetota
Microbispora triticiradicis NEAU-HRDPA2-9 [QFZU]
55309
55226
-
Leu
CAG
[ENA]
¡û
>W1810597133
QGHB01000001
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
702524
702606
+
Leu
CAG
[ENA]
¡û
>W1810609401
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
1289042
1288957
-
Leu
CAG
[ENA]
¡û
>W1810676868
QKMH01000017
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
32590
32506
-
Leu
CAG
[ENA]
¡û
>W1810679024
QKNV01000173
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
1753
1669
-
Leu
CAG
[ENA]
¡û
>W1810697003
QLTT01000002
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
114955
114873
-
Leu
CAG
[ENA]
¡û
>W1810733370
QOHF01000006
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
33915
33831
-
Leu
CAG
[ENA]
¡û
>W1810733414
QOHG01000003
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
192833
192918
+
Leu
CAG
[ENA]
¡û
>W1810733491
QOHH01000010
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
64260
64175
-
Leu
CAG
[ENA]
¡û
>W1810733561
QOHJ01000001
Actinomycetota
Blastococcus sp. TF02A-30 [QOHJ]
129897
129814
-
Leu
CAG
[ENA]
¡û
>W1810733643
QOHK01000010
Actinomycetota
Blastococcus sp. TF02-8 [QOHK]
13604
13689
+
Leu
CAG
[ENA]
¡û
>W1810763073
QQAU01000018
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
135194
135112
-
Leu
CAG
[ENA]
¡û
>W1810915006
QVQH01000010
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
139050
139135
+
Leu
CAG
[ENA]
¡û
>W1510013110
BBOJ01000001
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
422405
422487
+
Leu
CAG
[ENA]
¡û
>W1510013607
BBOZ01000001
Actinomycetota
Microbispora sp. NBRC 110460 [BBOZ]
211975
211890
-
Leu
CAG
[ENA]
¡û
>C10107387
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
49747
49830
+
Leu
CAG
[Ensembl]
¡û
>C10109863
CP001737
Actinomycetota
Nakamurella multipartita DSM 44233 [CP001737]
101478
101561
+
Leu
CAG
[Ensembl]
¡û
>W1511307066
JPMX01000002
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
16210
16293
+
Leu
CAG
[ENA]
¡û
>W1511529156
JYJG01000130
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
11511
11593
+
Leu
CAG
[ENA]
¡û
>W1511697439
LGDY01000014
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
96667
96749
+
Leu
CAG
[ENA]
¡û
>C121016087
FO117623
Actinomycetota
Blastococcus saxobsidens DD2 [FO117623]
50041
50124
+
Leu
CAG
[Ensembl]
¡û
>C121016185
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
34767
34852
+
Leu
CAG
[Ensembl]
¡û
>W1610050935
BBGI01000241
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
2140
2225
+
Leu
CAG
[ENA]
¡û
>W1610057180
BBXC01000024
Actinomycetota
Herbidospora sakaeratensis [BBXC]
61243
61326
+
Leu
CAG
[ENA]
¡û
>W1610057190
BBXD01000008
Actinomycetota
Herbidospora mongoliensis [BBXD]
150678
150763
+
Leu
CAG
[ENA]
¡û
>W1610057260
BBXE01000016
Actinomycetota
Herbidospora yilanensis [BBXE]
254988
255071
+
Leu
CAG
[ENA]
¡û
>W1610057316
BBXF01000002
Actinomycetota
Herbidospora daliensis [BBXF]
647846
647929
+
Leu
CAG
[ENA]
¡û
>W1610057366
BBXG01000002
Actinomycetota
Herbidospora cretacea [BBXG]
53970
53887
-
Leu
CAG
[ENA]
¡û
>W1610057565
BBYJ01000023
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
42046
42131
+
Leu
CAG
[ENA]
¡û
>W1610057591
BBYK01000039
Actinomycetota
Microtetraspora fusca [BBYK]
408239
408324
+
Leu
CAG
[ENA]
¡û
>W1610057669
BBYL01000013
Actinomycetota
Microtetraspora glauca [BBYL]
104025
103940
-
Leu
CAG
[ENA]
¡û
>W1610057727
BBYM01000010
Actinomycetota
Microtetraspora niveoalba [BBYM]
44277
44192
-
Leu
CAG
[ENA]
¡û
>W1610060622
BCBX01000037
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
152690
152605
-
Leu
CAG
[ENA]
¡û
>W1610068435
BCRI01000102
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
24689
24774
+
Leu
CAG
[ENA]
¡û
>W1610739713
LMQA01000002
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
95649
95564
-
Leu
CAG
[ENA]
¡û
>W1610739793
LMQC01000019
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
502291
502376
+
Leu
CAG
[ENA]
¡û
>W1611063215
MBFF01000966
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
697
782
+
Leu
CAG
[ENA]
¡û
>W1730032473
MOMC01000024
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
19999
19916
-
Leu
CAG
[ENA]
¡û
>W1710047334
BBGI01000241
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
2140
2225
+
Leu
CAG
[ENA]
¡û
>W1710053879
BBXC01000024
Actinomycetota
Herbidospora sakaeratensis [BBXC]
61243
61326
+
Leu
CAG
[ENA]
¡û
>W1710053889
BBXD01000008
Actinomycetota
Herbidospora mongoliensis [BBXD]
150678
150763
+
Leu
CAG
[ENA]
¡û
>W1710053959
BBXE01000016
Actinomycetota
Herbidospora yilanensis [BBXE]
254988
255071
+
Leu
CAG
[ENA]
¡û
>W1710054015
BBXF01000002
Actinomycetota
Herbidospora daliensis [BBXF]
647846
647929
+
Leu
CAG
[ENA]
¡û
>W1710054065
BBXG01000002
Actinomycetota
Herbidospora cretacea [BBXG]
53970
53887
-
Leu
CAG
[ENA]
¡û
>W1710054264
BBYJ01000023
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
42046
42131
+
Leu
CAG
[ENA]
¡û
>W1710054290
BBYK01000039
Actinomycetota
Microtetraspora fusca [BBYK]
408239
408324
+
Leu
CAG
[ENA]
¡û
>W1710054368
BBYL01000013
Actinomycetota
Microtetraspora glauca [BBYL]
104025
103940
-
Leu
CAG
[ENA]
¡û
>W1710054426
BBYM01000010
Actinomycetota
Microtetraspora niveoalba [BBYM]
44277
44192
-
Leu
CAG
[ENA]
¡û
>W1710057877
BCBX01000037
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
152690
152605
-
Leu
CAG
[ENA]
¡û
>W1710065808
BCRI01000102
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
24689
24774
+
Leu
CAG
[ENA]
¡û
>W1710506102
FMUH01000007
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
167824
167741
-
Leu
CAG
[ENA]
¡û
>W1710512223
FMZF01000007
Actinomycetota
Geodermatophilus telluris [FMZF]
114345
114430
+
Leu
CAG
[ENA]
¡û
>W1710514352
FNAW01000009
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
64710
64625
-
Leu
CAG
[ENA]
¡û
>W1710515395
FNBT01000009
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
126835
126750
-
Leu
CAG
[ENA]
¡û
>W1710515824
FNCC01000038
Actinomycetota
Lentzea fradiae [FNCC]
716
798
+
Leu
CAG
[ENA]
¡û
>W1710515982
FNCF01000006
Actinomycetota
Klenkia brasiliensis [FNCF]
188431
188514
+
Leu
CAG
[ENA]
¡û
>W1710519460
FNET01000006
Actinomycetota
Lentzea albidocapillata violacea [FNET]
213130
213212
+
Leu
CAG
[ENA]
¡û
>W1710522447
FNHE01000009
Actinomycetota
Geodermatophilus siccatus [FNHE]
102776
102859
+
Leu
CAG
[ENA]
¡û
>W1710524321
FNIQ01000003
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
640232
640315
+
Leu
CAG
[ENA]
¡û
>W1710524389
FNIR01000011
Actinomycetota
Klenkia soli [FNIR]
145446
145363
-
Leu
CAG
[ENA]
¡û
>W1710524690
FNIX01000014
Actinomycetota
Lentzea jiangxiensis [FNIX]
118376
118294
-
Leu
CAG
[ENA]
¡û
>W1710530476
FNOT01000008
Actinomycetota
Geodermatophilus africanus [FNOT]
154974
154891
-
Leu
CAG
[ENA]
¡û
>W1710530741
FNOZ01000020
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
80849
80932
+
Leu
CAG
[ENA]
¡û
>W1710544071
FOAO01000010
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
121076
121159
+
Leu
CAG
[ENA]
¡û
>W1710550909
FOFR01000001
Actinomycetota
Lentzea xinjiangensis [FOFR]
144734
144652
-
Leu
CAG
[ENA]
¡û
>W1710551067
FOFT01000018
Actinomycetota
Lentzea flaviverrucosa [FOFT]
100528
100610
+
Leu
CAG
[ENA]
¡û
>W1710551162
FOFV01000039
Actinomycetota
Lentzea albida [FOFV]
756
838
+
Leu
CAG
[ENA]
¡û
>W1710558756
FOMD01000001
Actinomycetota
Klenkia taihuensis [FOMD]
170328
170245
-
Leu
CAG
[ENA]
¡û
>W1710560144
FOND01000008
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
137394
137309
-
Leu
CAG
[ENA]
¡û
>W1710567617
FOSW01000014
Actinomycetota
Geodermatophilus ruber [FOSW]
121964
122049
+
Leu
CAG
[ENA]
¡û
>W1710571791
FOWE01000012
Actinomycetota
Geodermatophilus obscurus [FOWE]
152360
152275
-
Leu
CAG
[ENA]
¡û
>W1710572393
FOWQ01000007
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
134527
134612
+
Leu
CAG
[ENA]
¡û
>W1710574729
FOYL01000004
Actinomycetota
Lentzea waywayandensis [FOYL]
493090
493008
-
Leu
CAG
[ENA]
¡û
>W1710577757
FPBA01000038
Actinomycetota
Geodermatophilus amargosae [FPBA]
6763
6678
-
Leu
CAG
[ENA]
¡û
>W1710584730
FQVU01000002
Actinomycetota
Jatrophihabitans endophyticus [FQVU]
762511
762426
-
Leu
CAG
[ENA]
¡û
>W1710584901
FQVX01000004
Actinomycetota
Geodermatophilus nigrescens [FQVX]
82986
83071
+
Leu
CAG
[ENA]
¡û
>W1710592806
FRCS01000018
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
24571
24486
-
Leu
CAG
[ENA]
¡û
>W1710593494
FRDM01000039
Actinomycetota
Geodermatophilus obscurus [FRDM]
29504
29587
+
Leu
CAG
[ENA]
¡û
>W1710597643
FTNI01000015
Actinomycetota
Microbispora rosea [FTNI]
129029
129114
+
Leu
CAG
[ENA]
¡û
>W1710606872
FWYC01000030
Actinomycetota
Lentzea albidocapillata [FWYC]
807
889
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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