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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8272 (28 seq.)
>W1710893133
LNEL01000038
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077536 [LNEL]
42104
42012
-
Ser
GCT
[ENA]
¡û
>W131218635
ATXX01000022
Gammaproteobacteria
Methylocaldum szegediense O-12 [ATXX]
133807
133899
+
Ser
GCT
[ENA]
¡û
>W1711386532
MEFO01000004
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
238097
238005
-
Ser
GCT
[ENA]
¡û
>W1711387538
MEGS01000056
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
4289
4197
-
Ser
GCT
[ENA]
¡û
>W131175933
ARJQ01000005
Gammaproteobacteria
Rudaea cellulosilytica DSM 22992 [ARJQ]
85777
85685
-
Ser
GCT
[ENA]
¡û
>W1711506697
MKWQ01000005
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
370842
370750
-
Ser
GCT
[ENA]
¡û
>W1711687780
MSCV01000025
Gammaproteobacteria
Methylocaldum sp. 14B [MSCV]
36919
36827
-
Ser
GCT
[ENA]
¡û
>W1711744223
MUGL01000052
Gammaproteobacteria
Methylocaldum sp. SAD2 [MUGL]
26394
26486
+
Ser
GCT
[ENA]
¡û
>C171062130
CP017415
Gammaproteobacteria
Acidihalobacter yilgarnensis F5 [CP017415]
2766855
2766763
-
Ser
GCT
-
¡û
>WENV170012222
APMI01138137
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
505
413
-
Ser
GCT
[ENA]
¡û
>WENV170013747
AUZZ01002028
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
99
7
-
Ser
GCT
[ENA]
¡û
>WENV170711084
LNFM01003489
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
381
289
-
Ser
GCT
[ENA]
¡û
>C181160773
CP027860
Gammaproteobacteria
Ahniella affigens D13 [CP027860]
3058155
3058063
-
Ser
GCT
-
¡û
>W1910729377
MGYM01000037
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_38_11 [MGYM]
2565
2657
+
Ser
GCT
[ENA]
¡û
>W1910729672
MGYV01000054
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_38_14 [MGYV]
10360
10268
-
Ser
GCT
[ENA]
¡û
>W2010362784
CADDYU010000001
Gammaproteobacteria
Methylococcaceae bacterium [CADDYU]
76731
76823
+
Ser
GCT
[ENA]
¡û
>W2010862806
MGYM01000037
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_38_11 [MGYM]
2565
2657
+
Ser
GCT
[ENA]
¡û
>W2010863102
MGYV01000054
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_38_14 [MGYV]
10360
10268
-
Ser
GCT
[ENA]
¡û
>W2011538841
SCNG01000006
Gammaproteobacteria
Rudaea sp. 3F27F6 [SCNG]
147572
147480
-
Ser
GCT
[ENA]
¡û
>W2011554570
SEJA01000012
Gammaproteobacteria
Methylocaldum sp. BRCS4 [SEJA]
112770
112678
-
Ser
GCT
[ENA]
¡û
>W2011651974
SNZL01000017
Gammaproteobacteria
Methylocaldum sp. 0917 [SNZL]
55722
55814
+
Ser
GCT
[ENA]
¡û
>W2110500093
JAFIBZ010000018
Gammaproteobacteria
Methylocaldum sp. RMAD-M [JAFIBZ]
61166
61074
-
Ser
GCT
[ENA]
¡û
>C211276936
CP070491
Gammaproteobacteria
Methylococcus sp. EFPC2 [CP070491]
4291806
4291898
+
Ser
GCT
-
¡û
>C241127381
CP048029
Gammaproteobacteria
Caldichromatium japonicum No.7 [CP048029]
1401691
1401783
+
Ser
GCT
-
¡û
>C241389660
OX458333
Gammaproteobacteria
Methylocaldum szegediense [OX458333]
3525893
3525985
+
Ser
GCT
-
¡û
>C161085652
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2632803
2632711
-
Ser
GCT
[Ensembl]
¡û
>W1610753399
LNEL01000038
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077536 [LNEL]
42104
42012
-
Ser
GCT
[ENA]
¡û
>W1710707108
LDOS01000002
Gammaproteobacteria
Metallibacterium scheffleri [LDOS]
1730969
1730877
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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