This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84037 (79 seq.)
>C171096251
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
3729423
3729508
+
Leu
CAG
-
¡û
>C171096289
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
2098708
2098791
+
Leu
CAG
-
¡û
>WENV180318044
OBKL01042425
[OBKL] soil metagenome; Alaskan Permafrost
175
92
-
Leu
CAG
[ENA]
¢þ
>WENV180728349
ODGU01041058
[ODGU] human metagenome; G_DNA_Supragingival plaque
239
322
+
Leu
CAG
[ENA]
¢þ
>WENV180734184
ODGZ01003540
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1675
1758
+
Leu
CAG
[ENA]
¢þ
>WENV180734702
ODGZ01018380
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1358
1441
+
Leu
CAG
[ENA]
¢þ
>WENV180735747
ODHB01000529
[ODHB] human metagenome; G_DNA_Supragingival plaque
1841
1758
-
Leu
CAG
[ENA]
¢þ
>WENV180749929
ODHS01000130
[ODHS] human metagenome; G_DNA_Supragingival plaque
30862
30945
+
Leu
CAG
[ENA]
¢þ
>WENV180755036
ODHU01008495
[ODHU] human metagenome; G_DNA_Supragingival plaque
1549
1632
+
Leu
CAG
[ENA]
¢þ
>WENV180777173
ODIL01000245
[ODIL] human metagenome; G_DNA_Supragingival plaque
5433
5516
+
Leu
CAG
[ENA]
¢þ
>WENV180778474
ODIM01008803
[ODIM] human metagenome; G_DNA_Supragingival plaque
1681
1764
+
Leu
CAG
[ENA]
¢þ
>WENV180781841
ODIP01005420
[ODIP] human metagenome; G_DNA_Supragingival plaque
122
39
-
Leu
CAG
[ENA]
¢þ
>WENV180789266
ODIS01381762
[ODIS] human metagenome; G_DNA_Supragingival plaque
2
85
+
Leu
CAG
[ENA]
¢þ
>WENV180797701
ODJB01104409
[ODJB] human metagenome; G_DNA_Supragingival plaque
177
94
-
Leu
CAG
[ENA]
¢þ
>WENV180801433
ODJD01030905
[ODJD] human metagenome; G_DNA_Supragingival plaque
710
793
+
Leu
CAG
[ENA]
¢þ
>WENV180804533
ODJG01005072
[ODJG] human metagenome; G_DNA_Supragingival plaque
1822
1739
-
Leu
CAG
[ENA]
¢þ
>WENV180804796
ODJG01013619
[ODJG] human metagenome; G_DNA_Supragingival plaque
838
755
-
Leu
CAG
[ENA]
¢þ
>WENV180814257
ODJO01010684
[ODJO] human metagenome; G_DNA_Supragingival plaque
3044
2961
-
Leu
CAG
[ENA]
¢þ
>WENV180823693
ODJW01109884
[ODJW] human metagenome; G_DNA_Supragingival plaque
217
300
+
Leu
CAG
[ENA]
¢þ
>WENV180834267
ODKD01008649
[ODKD] human metagenome; G_DNA_Supragingival plaque
4
87
+
Leu
CAG
[ENA]
¢þ
>WENV180835708
ODKE01009311
[ODKE] human metagenome; G_DNA_Supragingival plaque
870
953
+
Leu
CAG
[ENA]
¢þ
>WENV180843752
ODKN01010488
[ODKN] human metagenome; G_DNA_Supragingival plaque
1885
1802
-
Leu
CAG
[ENA]
¢þ
>WENV180846200
ODKT01006889
[ODKT] human metagenome; G_DNA_Supragingival plaque
2000
1917
-
Leu
CAG
[ENA]
¢þ
>WENV180860243
ODLD01035255
[ODLD] human metagenome; G_DNA_Supragingival plaque
154
71
-
Leu
CAG
[ENA]
¢þ
>WENV180881223
ODLZ01243560
[ODLZ] human metagenome; G_DNA_Tongue dorsum
96
179
+
Leu
CAG
[ENA]
¢þ
>WENV180889526
ODMN01055910
[ODMN] human metagenome; G_DNA_Supragingival plaque
452
535
+
Leu
CAG
[ENA]
¢þ
>WENV180922183
ODTJ01001732
[ODTJ] human metagenome; G_DNA_Supragingival plaque
5429
5512
+
Leu
CAG
[ENA]
¢þ
>WENV180924326
ODTK01003338
[ODTK] human metagenome; G_DNA_Supragingival plaque
179
96
-
Leu
CAG
[ENA]
¢þ
>WENV180927794
ODTM01003977
[ODTM] human metagenome; G_DNA_Supragingival plaque
4303
4386
+
Leu
CAG
[ENA]
¢þ
>WENV180927823
ODTM01004434
[ODTM] human metagenome; G_DNA_Supragingival plaque
2111
2028
-
Leu
CAG
[ENA]
¢þ
>WENV180933345
ODTR01000045
[ODTR] human metagenome; G_DNA_Supragingival plaque
29010
28927
-
Leu
CAG
[ENA]
¢þ
>WENV180934420
ODTS01000038
[ODTS] human metagenome; G_DNA_Subgingival plaque
29010
28927
-
Leu
CAG
[ENA]
¢þ
>WENV180938690
ODTX01005076
[ODTX] human metagenome; G_DNA_Supragingival plaque
1231
1148
-
Leu
CAG
[ENA]
¢þ
>WENV180938702
ODTX01005220
[ODTX] human metagenome; G_DNA_Supragingival plaque
5716
5799
+
Leu
CAG
[ENA]
¢þ
>WENV180944166
ODUC01009422
[ODUC] human metagenome; G_DNA_Supragingival plaque
401
318
-
Leu
CAG
[ENA]
¢þ
>WENV180958247
ODUL01001609
[ODUL] human metagenome; G_DNA_Supragingival plaque
5558
5641
+
Leu
CAG
[ENA]
¢þ
>WENV180963883
ODUO01000015
[ODUO] human metagenome; G_DNA_Supragingival plaque
21930
21847
-
Leu
CAG
[ENA]
¢þ
>WENV180973739
ODUW01015708
[ODUW] human metagenome; G_DNA_Supragingival plaque
1594
1677
+
Leu
CAG
[ENA]
¢þ
>WENV180973825
ODUW01021198
[ODUW] human metagenome; G_DNA_Supragingival plaque
1259
1342
+
Leu
CAG
[ENA]
¢þ
>WENV180973826
ODUW01021270
[ODUW] human metagenome; G_DNA_Supragingival plaque
857
940
+
Leu
CAG
[ENA]
¢þ
>WENV180980353
ODVE01000080
[ODVE] human metagenome; G_DNA_Supragingival plaque
1664
1747
+
Leu
CAG
[ENA]
¢þ
>WENV180982721
ODVF01000381
[ODVF] human metagenome; G_DNA_Supragingival plaque
5031
5114
+
Leu
CAG
[ENA]
¢þ
>WENV180992617
ODVP01064346
[ODVP] human metagenome; G_DNA_Buccal mucosa
151
234
+
Leu
CAG
[ENA]
¢þ
>WENV181002677
ODVX01001161
[ODVX] human metagenome; G_DNA_Supragingival plaque
394
311
-
Leu
CAG
[ENA]
¢þ
>WENV181008198
ODWE01002755
[ODWE] human metagenome; G_DNA_Supragingival plaque
4846
4929
+
Leu
CAG
[ENA]
¢þ
>WENV181008428
ODWE01005257
[ODWE] human metagenome; G_DNA_Supragingival plaque
3277
3360
+
Leu
CAG
[ENA]
¢þ
>WENV181009326
ODWE01052794
[ODWE] human metagenome; G_DNA_Supragingival plaque
86
3
-
Leu
CAG
[ENA]
¢þ
>WENV181020225
ODWU01078577
[ODWU] human metagenome; G_DNA_Supragingival plaque
321
238
-
Leu
CAG
[ENA]
¢þ
>WENV181050142
ODYD01007351
[ODYD] human metagenome; G_DNA_Supragingival plaque
3463
3546
+
Leu
CAG
[ENA]
¢þ
>WENV181050479
ODYD01020761
[ODYD] human metagenome; G_DNA_Supragingival plaque
1674
1591
-
Leu
CAG
[ENA]
¢þ
>WENV181063189
ODYP01000192
[ODYP] human metagenome; G_DNA_Supragingival plaque
44238
44155
-
Leu
CAG
[ENA]
¢þ
>WENV181067326
ODZI01013141
[ODZI] human metagenome; G_DNA_Supragingival plaque
97
14
-
Leu
CAG
[ENA]
¢þ
>WENV181067416
ODZI01017621
[ODZI] human metagenome; G_DNA_Supragingival plaque
97
14
-
Leu
CAG
[ENA]
¢þ
>WENV181070775
OEAE01009405
[OEAE] human metagenome; G_DNA_Supragingival plaque
372
289
-
Leu
CAG
[ENA]
¢þ
>WENV181076337
OEAP01003981
[OEAP] human metagenome; G_DNA_Supragingival plaque
4711
4628
-
Leu
CAG
[ENA]
¢þ
>WENV181079527
OEAS01008202
[OEAS] human metagenome; G_DNA_Supragingival plaque
2311
2228
-
Leu
CAG
[ENA]
¢þ
>WENV181080194
OEAS01032316
[OEAS] human metagenome; G_DNA_Supragingival plaque
700
617
-
Leu
CAG
[ENA]
¢þ
>WENV181083319
OEAV01005037
[OEAV] human metagenome; G_DNA_Supragingival plaque
141
58
-
Leu
CAG
[ENA]
¢þ
>WENV181091201
OEBC01016955
[OEBC] human metagenome; G_DNA_Supragingival plaque
1305
1388
+
Leu
CAG
[ENA]
¢þ
>WENV181108173
OEEI01119046
[OEEI] human metagenome; G_DNA_Supragingival plaque
238
155
-
Leu
CAG
[ENA]
¢þ
>WENV181122005
OEFL01045432
[OEFL] human metagenome; G_DNA_Supragingival plaque
364
447
+
Leu
CAG
[ENA]
¢þ
>WENV181137965
OEGJ01056271
[OEGJ] human metagenome; G_DNA_Supragingival plaque
423
506
+
Leu
CAG
[ENA]
¢þ
>WENV181144082
OEHM01079709
[OEHM] human metagenome; G_DNA_Supragingival plaque
110
27
-
Leu
CAG
[ENA]
¢þ
>WENV181146303
OEHQ01002919
[OEHQ] human metagenome; G_DNA_Supragingival plaque
6209
6292
+
Leu
CAG
[ENA]
¢þ
>WENV181152823
OEIA01007382
[OEIA] human metagenome; G_DNA_Supragingival plaque
3528
3611
+
Leu
CAG
[ENA]
¢þ
>WENV181156225
OEIE01006098
[OEIE] human metagenome; G_DNA_Supragingival plaque
114
31
-
Leu
CAG
[ENA]
¢þ
>WENV181160718
OEIK01027582
[OEIK] human metagenome; G_DNA_Supragingival plaque
961
1044
+
Leu
CAG
[ENA]
¢þ
>WENV181177399
OEJS01001450
[OEJS] human metagenome; G_DNA_Supragingival plaque
2340
2257
-
Leu
CAG
[ENA]
¢þ
>WENV181179049
OEJT01001077
[OEJT] human metagenome; G_DNA_Supragingival plaque
10468
10551
+
Leu
CAG
[ENA]
¢þ
>WENV181181813
OEJV01000308
[OEJV] human metagenome; G_DNA_Supragingival plaque
7325
7408
+
Leu
CAG
[ENA]
¢þ
>WENV183508626
OMHE01006596
[OMHE] human oral metagenome; human oral
714
797
+
Leu
CAG
[ENA]
¢þ
>C181232160
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
1584133
1584218
+
Leu
CAG
-
¡û
>C191173841
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
2975209
2975126
-
Leu
CAG
-
¡û
>C191210856
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
2924820
2924737
-
Leu
CAG
-
¡û
>C191214571
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
2927867
2927784
-
Leu
CAG
-
¡û
>C121002948
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
2987538
2987453
-
Leu
CAG
[Ensembl]
¡û
>W1610074488
BCWS01000003
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
378437
378522
+
Leu
CAG
[ENA]
¡û
>W1710071606
BCWS01000003
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
378437
378522
+
Leu
CAG
[ENA]
¡û
>W1710588342
FQZG01000054
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
24593
24508
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK