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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84570 (70 seq.)
>W1711229364
LXYJ01000019
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
51435
51521
+
Leu
CAG
[ENA]
¡û
>W1711511049
MLCB01000140
Alphaproteobacteria
Planktotalea frisia [MLCB]
149
63
-
Leu
CAG
[ENA]
¡û
>W1711621281
MPCY01000103
Alphaproteobacteria
Roseobacter sp. MedPE-SW [MPCY]
12396
12310
-
Leu
CAG
[ENA]
¡û
>W1711621351
MPDA01000011
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
12343
12257
-
Leu
CAG
[ENA]
¡û
>C171118948
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
3352074
3352160
+
Leu
CAG
-
¡û
>W131045373
AMRK01000001
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
429512
429598
+
Leu
CAG
[ENA]
¡û
>C011103
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
237080
236994
-
Leu
CAG
[Ensembl]
¡û
>w023596
AAXZ01000008
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
63595
63683
+
Leu
CAG
[ENA]
¡û
>w013127
AANB01000007
Alphaproteobacteria
Roseobacter sp. MED193 [AANB]
16340
16426
+
Leu
CAG
[ENA]
¡û
>w013111
AANB01000002
Alphaproteobacteria
Roseobacter sp. MED193 [AANB]
135120
135032
-
Leu
CAG
[ENA]
¡û
>w012720
AAMS01000001
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
434668
434756
+
Leu
CAG
[ENA]
¡û
>WENV180214583
OBAP01016240
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
347
261
-
Leu
CAG
[ENA]
¡û
>W141151650
AXBF01000002
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
2287942
2287856
-
Leu
CAG
[ENA]
¡û
>W141151670
AXBF01000003
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
859156
859070
-
Leu
CAG
[ENA]
¡û
>W141151721
AXBG01000025
Alphaproteobacteria
Sedimentitalea nanhaiensis DSM 24252 [AXBG]
23379
23293
-
Leu
CAG
[ENA]
¡û
>WENV170121124
CENL01052500
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1124
1038
-
Leu
CAG
[ENA]
¡û
>WENV170402445
CEUE01449459
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
595
509
-
Leu
CAG
[ENA]
¡û
>WENV170625516
FUWD013199654
[FUWD] metagenome; unknown
1033
1119
+
Leu
CAG
[ENA]
¡û
>WENV170625517
FUWD013199655
[FUWD] metagenome; unknown
207
293
+
Leu
CAG
[ENA]
¡û
>WENV170633745
FUWD013402010
[FUWD] metagenome; unknown
1033
1119
+
Leu
CAG
[ENA]
¡û
>WENV170633746
FUWD013402011
[FUWD] metagenome; unknown
207
293
+
Leu
CAG
[ENA]
¡û
>WENV170635451
JDSF01025249
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
95
181
+
Leu
CAG
[ENA]
¡û
>WENV170705258
LLEQ01001520
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
769
855
+
Leu
CAG
[ENA]
¡û
>WENV170783025
MAAC01013017
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5283
5197
-
Leu
CAG
[ENA]
¡û
>WENV170783886
MAAC01019382
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
10620
10706
+
Leu
CAG
[ENA]
¡û
>WENV170791583
MDSV01085635
[MDSV] marine metagenome; seawater
6175
6261
+
Leu
CAG
[ENA]
¡û
>C191160507
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
3262850
3262936
+
Leu
CAG
-
¡û
>W09102729
AAIG01000001
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
739778
739692
-
Leu
CAG
[ENA]
¡û
>W09111641
ABXE01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
18072
18158
+
Leu
CAG
[ENA]
¡û
>W1910443217
FWFW01000012
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
9827
9741
-
Leu
CAG
[ENA]
¡û
>W1910499072
FXXQ01000011
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
3296
3210
-
Leu
CAG
[ENA]
¡û
>W1910499738
FXYE01000002
Alphaproteobacteria
Confluentimicrobium lipolyticum CECT 8621 [FXYE]
1523155
1523241
+
Leu
CAG
[ENA]
¡û
>W1911539234
OMPQ01000011
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
324814
324728
-
Leu
CAG
[ENA]
¡û
>W1911539250
OMPQ01000015
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
438801
438715
-
Leu
CAG
[ENA]
¡û
>W1810685711
QKZM01000038
Alphaproteobacteria
Planktotalea frisia DSM 23709 [QKZM]
1015
929
-
Leu
CAG
[ENA]
¡û
>SRA1030208
SRR035087.242672
454 Sequencing (SRP001808)
207
293
+
Leu
CAG
[SRA]
>SRA1031697
SRR035087.473375
454 Sequencing (SRP001808)
345
431
+
Leu
CAG
[SRA]
>W2010406581
FWFW01000012
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
9827
9741
-
Leu
CAG
[ENA]
¡û
>W2010418775
FXXQ01000011
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
3296
3210
-
Leu
CAG
[ENA]
¡û
>W2010419441
FXYE01000002
Alphaproteobacteria
Confluentimicrobium lipolyticum CECT 8621 [FXYE]
1523155
1523241
+
Leu
CAG
[ENA]
¡û
>W2011169509
OMPQ01000011
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
324814
324728
-
Leu
CAG
[ENA]
¡û
>W2011169525
OMPQ01000015
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
438801
438715
-
Leu
CAG
[ENA]
¡û
>W2011231727
PYIB01000028
Alphaproteobacteria
Roseobacter sp. TSBP12 [PYIB]
127043
127129
+
Leu
CAG
[ENA]
¡û
>W2011453430
RKQK01000004
Alphaproteobacteria
Pacificibacter maritimus DSM 104731 [RKQK]
148401
148315
-
Leu
CAG
[ENA]
¡û
>W2012102538
VOGO01000005
Alphaproteobacteria
Phaeobacter marinintestinus UB-M7 [VOGO]
349416
349502
+
Leu
CAG
[ENA]
¡û
>SRA1052346
SRR035098.184878
454 Sequencing (SRP001819)
100
14
-
Leu
CAG
[SRA]
>W2110371926
JADQAZ010000002
Alphaproteobacteria
Alphaproteobacteria bacterium KMM 3653 [JADQAZ]
299939
299853
-
Leu
CAG
[ENA]
¡û
>W2110420418
JAEKDP010000014
Alphaproteobacteria
Rhodobacteraceae bacterium F11138 [JAEKDP]
42033
42119
+
Leu
CAG
[ENA]
¡û
>W2110611410
JAHKPK010000022
Alphaproteobacteria
Pacificibacter marinus F2R14 [JAHKPK]
142078
142164
+
Leu
CAG
[ENA]
¡û
>W2110611844
JAHKPU010000020
Alphaproteobacteria
Pacificibacter marinus D2R04 [JAHKPU]
122170
122256
+
Leu
CAG
[ENA]
¡û
>W2110683986
JAIMBW010000001
Alphaproteobacteria
N5(2021) [JAIMBW]
3280324
3280238
-
Leu
CAG
[ENA]
¡û
>W2110685801
JAIMIC010000008
Alphaproteobacteria
Roseobacteraceae bacterium T40-3 [JAIMIC]
3116
3030
-
Leu
CAG
[ENA]
¡û
>C211366995
CP079194
Alphaproteobacteria
Jannaschia sp. J12C1-MA-4 [CP079194]
383559
383473
-
Leu
CAG
-
¡û
>C231169358
CP081102
Alphaproteobacteria
Rhodobacteraceae bacterium M385 [CP081102]
164637
164551
-
Leu
CAG
-
¡û
>C231484851
CP104100
Alphaproteobacteria
Phaeobacter sp. G2 [CP104100]
92616
92702
+
Leu
CAG
-
¡û
>C231484891
CP104100
Alphaproteobacteria
Phaeobacter sp. G2 [CP104100]
3130122
3130036
-
Leu
CAG
-
¡û
>C231498428
CP104793
Alphaproteobacteria
Rhodobacteraceae bacterium D3-12 [CP104793]
4259034
4259120
+
Leu
CAG
-
¡û
>W2110783439
WJSC01000014
Alphaproteobacteria
Sulfitobacter sp. BDSS02 [WJSC]
49265
49179
-
Leu
CAG
[ENA]
¡û
>C241149193
CP051181
Alphaproteobacteria
Thalassovita gelatinovora NEB572 [CP051181]
2289763
2289849
+
Leu
CAG
-
¡û
>W1610092699
CYSA01000007
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
260933
261019
+
Leu
CAG
[ENA]
¡û
>W1610093000
CYSG01000003
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
329622
329708
+
Leu
CAG
[ENA]
¡û
>W1610093026
CYSG01000023
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
40480
40566
+
Leu
CAG
[ENA]
¡û
>W1611013234
LXYJ01000019
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
51435
51521
+
Leu
CAG
[ENA]
¡û
>W1710015344
AQQP01000002
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
449989
450075
+
Leu
CAG
[ENA]
¡û
>W1710095954
CYSA01000007
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
260933
261019
+
Leu
CAG
[ENA]
¡û
>W1710515033
FNBL01000004
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
166043
166129
+
Leu
CAG
[ENA]
¡û
>W1710543300
FNZV01000012
Alphaproteobacteria
Pacificibacter marinus [FNZV]
23478
23392
-
Leu
CAG
[ENA]
¡û
>W1710543308
FNZV01000027
Alphaproteobacteria
Pacificibacter marinus [FNZV]
11548
11462
-
Leu
CAG
[ENA]
¡û
>W1710551188
FOFW01000007
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [FOFW]
258083
258169
+
Leu
CAG
[ENA]
¡û
>W1710577532
FPAW01000038
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
2453
2367
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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