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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.871027 (132 seq.)
>W1710860349
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1187855
1187782
-
Gly
CCC
[ENA]
¡û
>W1710861330
LMDN01000004
Actinomycetota
Leifsonia sp. Root4 [LMDN]
479054
478983
-
Gly
CCC
[ENA]
¡û
>W1710862337
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
139103
139176
+
Gly
CCC
[ENA]
¡û
>W1710865463
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
139072
139145
+
Gly
CCC
[ENA]
¡û
>W1710873329
LMMR01000008
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
203721
203648
-
Gly
CCC
[ENA]
¡û
>W1710875488
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
1068438
1068367
-
Gly
CCC
[ENA]
¡û
>W1710879757
LMRW01000013
Actinomycetota
Agromyces sp. Soil535 [LMRW]
61811
61882
+
Gly
CCC
[ENA]
¡û
>W131053586
ANAE01000123
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
22751
22678
-
Gly
CCC
[ENA]
¡û
>W131170528
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
1688598
1688671
+
Gly
CCC
[ENA]
¡û
>W131191168
ASHR01000035
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
23191
23118
-
Gly
CCC
[ENA]
¡û
>W1711386902
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
730362
730289
-
Gly
CCC
[ENA]
¡û
>W1711505557
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1323212
1323139
-
Gly
CCC
[ENA]
¡û
>C171111592
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
3990131
3990204
+
Gly
CCC
-
¡û
>WENV180015679
FSSP01000158
[FSSP] metagenome; soil
4891
4818
-
Gly
CCC
[ENA]
¡û
>WENV180016061
FSTY01000519
[FSTY] metagenome; soil
2846
2775
-
Gly
CCC
[ENA]
¡û
>WENV180016702
FSVT01001028
[FSVT] metagenome; soil
1884
1811
-
Gly
CCC
[ENA]
¡û
>WENV180017012
FSWJ01000453
[FSWJ] metagenome; soil
2458
2385
-
Gly
CCC
[ENA]
¡û
>WENV180023918
FTIF01003900
[FTIF] metagenome; soil
2255
2328
+
Gly
CCC
[ENA]
¡û
>WENV180028808
FTJH01001368
[FTJH] metagenome; soil
1469
1396
-
Gly
CCC
[ENA]
¡û
>WENV180029062
FTJI01014743
[FTJI] metagenome; soil
81
10
-
Gly
CCC
[ENA]
¡û
>WENV180029347
FTJI01815838
[FTJI] metagenome; soil
1449
1520
+
Gly
CCC
[ENA]
¡û
>WENV180030856
FTJN01201999
[FTJN] metagenome; soil
55
127
+
Gly
CCC
[ENA]
¡û
>WENV180033542
FTKK01349377
[FTKK] metagenome; soil
157
230
+
Gly
CCC
[ENA]
¡û
>WENV180034583
FTKR01013809
[FTKR] metagenome; soil
81
10
-
Gly
CCC
[ENA]
¡û
>WENV180034865
FTKR01815695
[FTKR] metagenome; soil
1449
1520
+
Gly
CCC
[ENA]
¡û
>WENV181222638
OFDC01000041
[OFDC] hot springs metagenome; Water
30607
30680
+
Gly
CCC
[ENA]
¡û
>W141219702
AZXF01000026
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
48709
48636
-
Gly
CCC
[ENA]
¡û
>W141223281
BADC01000692
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
3446
3519
+
Gly
CCC
[ENA]
¡û
>WENV183697454
OUNJ010974269
[OUNJ] metagenome; soil
112
39
-
Gly
CCC
[ENA]
¡û
>WENV170011440
APMI01065802
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
72
1
-
Gly
CCC
[ENA]
¡û
>C181143980
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
2668480
2668553
+
Gly
CCC
-
¡û
>C181196619
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
614756
614683
-
Gly
CCC
-
¡û
>W1910231921
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
1203797
1203870
+
Gly
CCC
[ENA]
¡û
>W1910285459
FRFF01000084
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
104001
104074
+
Gly
CCC
[ENA]
¡û
>W1910784627
MPZN01000042
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
24352
24425
+
Gly
CCC
[ENA]
¡û
>W1911823591
QZVS01000051
Actinomycetota
Cryobacterium sp. Hh39 [QZVS]
23767
23840
+
Gly
CCC
[ENA]
¡û
>SRA1002144
SRR001308.272310
Metagenomic characterization of a wastewater treatment plant (SRP000180)
177
106
-
Gly
CCC
[SRA]
>W1810277198
PSTQ01000003
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
227028
226955
-
Gly
CCC
[ENA]
¡û
>W1810277306
PSTT01000009
Actinomycetota
Subtercola sp. Z020 [PSTT]
25527
25455
-
Gly
CCC
[ENA]
¡û
>W1810277386
PSTU01000017
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
68451
68524
+
Gly
CCC
[ENA]
¡û
>W1810277526
PSTX01000019
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
89282
89355
+
Gly
CCC
[ENA]
¡û
>W1810277536
PSTY01000004
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
46479
46406
-
Gly
CCC
[ENA]
¡û
>W1810277670
PSUA01000015
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
129170
129243
+
Gly
CCC
[ENA]
¡û
>W1810282046
PSXX01000007
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
76454
76527
+
Gly
CCC
[ENA]
¡û
>W1810282136
PSXZ01000015
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
89274
89347
+
Gly
CCC
[ENA]
¡û
>W1810282191
PSYA01000012
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
51274
51347
+
Gly
CCC
[ENA]
¡û
>W1810282245
PSYB01000018
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
75643
75716
+
Gly
CCC
[ENA]
¡û
>W1810282254
PSYC01000003
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
3775
3702
-
Gly
CCC
[ENA]
¡û
>W1810400335
PYGA01000012
Actinomycetota
Murinocardiopsis flavida DSM 45312 [PYGA]
126676
126603
-
Gly
CCC
[ENA]
¡û
>W1810568835
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
1633304
1633377
+
Gly
CCC
[ENA]
¡û
>W1810569053
QEFB01000013
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
192452
192525
+
Gly
CCC
[ENA]
¡û
>W1810577921
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
586945
586872
-
Gly
CCC
[ENA]
¡û
>W1810608321
QGTF01000010
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
207405
207333
-
Gly
CCC
[ENA]
¡û
>W2010099819
BJUU01000002
Actinomycetota
Agrococcus baldri NBRC 103055 [BJUU]
20581
20510
-
Gly
CCC
[ENA]
¡û
>W2010309677
CABWLM010000013
Actinomycetota
Pseudoclavibacter sp. 8L [CABWLM]
18284
18211
-
Gly
CCC
[ENA]
¡û
>W2010385464
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
1203797
1203870
+
Gly
CCC
[ENA]
¡û
>W2010395722
FRFF01000084
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
104001
104074
+
Gly
CCC
[ENA]
¡û
>W2010473345
JAAIJT010000013
Actinomycetota
Salinibacterium sp. ZJ450 [JAAIJT]
13711
13638
-
Gly
CCC
[ENA]
¡û
>W2010473384
JAAIJU010000012
Actinomycetota
Salinibacterium sp. ZJ454 [JAAIJU]
57730
57803
+
Gly
CCC
[ENA]
¡û
>W2010609816
JABMLJ010000002
Actinomycetota
Herbiconiux sp. VKM Ac-2851 [JABMLJ]
443152
443080
-
Gly
CCC
[ENA]
¡û
>W2010671047
JACCBM010000001
Actinomycetota
Herbiconiux flava DSM 26474 [JACCBM]
752904
752976
+
Gly
CCC
[ENA]
¡û
>W2010672226
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
545159
545088
-
Gly
CCC
[ENA]
¡û
>W2010709134
JACHLY010000001
Actinomycetota
Streptomonospora salina DSM 44593 [JACHLY]
2367840
2367911
+
Gly
CCC
[ENA]
¡û
>W2010709723
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
3450236
3450163
-
Gly
CCC
[ENA]
¡û
>W2010715137
JACHWJ010000003
Actinomycetota
Pseudoclavibacter helvolus DSM 20419 [JACHWJ]
113148
113075
-
Gly
CCC
[ENA]
¡û
>W2010893216
MPZN01000042
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
24352
24425
+
Gly
CCC
[ENA]
¡û
>W2011350581
QZVS01000051
Actinomycetota
Cryobacterium sp. Hh39 [QZVS]
23767
23840
+
Gly
CCC
[ENA]
¡û
>W2011374285
RBIX01000003
Actinomycetota
Leifsonia sp. OV430 [RBIX]
47237
47310
+
Gly
CCC
[ENA]
¡û
>W2011391825
RBZZ01000018
Actinomycetota
Agrococcus lahaulensis LZB059 [RBZZ]
70
142
+
Gly
CCC
[ENA]
¡û
>W2011403421
RCUV01000003
Actinomycetota
Mycetocola manganoxydans CCTCC AB209002 [RCUV]
200798
200869
+
Gly
CCC
[ENA]
¡û
>W2011404201
RCWJ01000002
Actinomycetota
Mycetocola zhadangensis ZD1-4 [RCWJ]
548941
548870
-
Gly
CCC
[ENA]
¡û
>W2011411691
RDSR01000001
Actinomycetota
Cryobacterium sp. NEAU-85 [RDSR]
25115
25044
-
Gly
CCC
[ENA]
¡û
>W2011447420
RKHJ01000001
Actinomycetota
Agrococcus jenensis DSM 9580 [RKHJ]
1275687
1275758
+
Gly
CCC
[ENA]
¡û
>W2011538905
SCNI01000006
Actinomycetota
Microbacteriaceae bacterium 3FA27C10 [SCNI]
93300
93373
+
Gly
CCC
[ENA]
¡û
>W2011539004
SCNK01000013
Actinomycetota
Microbacteriaceae bacterium 3P27C6 [SCNK]
40142
40215
+
Gly
CCC
[ENA]
¡û
>W2011541208
SCPB01000012
Actinomycetota
Microbacteriaceae bacterium X2B [SCPB]
41247
41319
+
Gly
CCC
[ENA]
¡û
>W2011600606
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
2525614
2525687
+
Gly
CCC
[ENA]
¡û
>W2011650717
SNYN01000005
Actinomycetota
Actinorugispora endophytica DSM 46770 [SNYN]
131279
131206
-
Gly
CCC
[ENA]
¡û
>W2011662094
SOHE01000060
Actinomycetota
Cryobacterium sp. Hh14 [SOHE]
146098
146025
-
Gly
CCC
[ENA]
¡û
>W2011674531
SPQZ01000003
Actinomycetota
Leifsonia flava SYP-B2174 [SPQZ]
507354
507283
-
Gly
CCC
[ENA]
¡û
>W2011692093
SSSM01000005
Actinomycetota
Naasia sp. YIM 131853 [SSSM]
333098
333026
-
Gly
CCC
[ENA]
¡û
>W2011692136
SSSN01000007
Actinomycetota
Glaciibacter sp. YIM 131861 [SSSN]
128594
128666
+
Gly
CCC
[ENA]
¡û
>W2012020474
VFOM01000002
Actinomycetota
Homoserinimonas aerilata DSM 26477 [VFOM]
171335
171264
-
Gly
CCC
[ENA]
¡û
>W2012034483
VHQG01000001
Actinomycetota
Schumannella sp. 10F1D-1 [VHQG]
736602
736675
+
Gly
CCC
[ENA]
¡û
>W2012034530
VHQH01000002
Actinomycetota
Schumannella sp. 10F1B-5-1 [VHQH]
205386
205313
-
Gly
CCC
[ENA]
¡û
>W2012104617
VOIR01000012
Actinomycetota
Agrococcus sp. NS18 [VOIR]
366021
365949
-
Gly
CCC
[ENA]
¡û
>W2012308183
WEGH01000002
Actinomycetota
Actinomadura sp. RB68 [WEGH]
629033
628960
-
Gly
CCC
[ENA]
¡û
>W2110021326
BMEK01000002
Actinomycetota
Mycetocola zhadangensis CGMCC 1.12042 [BMEK]
323015
323086
+
Gly
CCC
[ENA]
¡û
>W2110023501
BMGB01000001
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
2484506
2484433
-
Gly
CCC
[ENA]
¡û
>W2110024768
BMHD01000001
Actinomycetota
Cnuibacter physcomitrellae CGMCC 1.15041 [BMHD]
2511193
2511266
+
Gly
CCC
[ENA]
¡û
>W2110030356
BMLM01000001
Actinomycetota
Agrococcus terreus CGMCC 1.6960 [BMLM]
397000
397071
+
Gly
CCC
[ENA]
¡û
>W2110047703
BMXM01000003
Actinomycetota
Mycetocola manganoxydans KCTC 19753 [BMXM]
206998
206927
-
Gly
CCC
[ENA]
¡û
>W2110051591
BNAI01000005
Actinomycetota
Lysinimonas yzui CGMCC 1.16548 [BNAI]
71520
71448
-
Gly
CCC
[ENA]
¡û
>W2110195931
JABXWQ010000001
Actinomycetota
Cryobacterium sp. BB736 [JABXWQ]
804566
804639
+
Gly
CCC
[ENA]
¡û
>W2110329673
JADKSG010000001
Actinomycetota
Herbiconiux sp. VKM Ac-1786 [JADKSG]
1440089
1440017
-
Gly
CCC
[ENA]
¡û
>W2110329919
JADKSL010000019
Actinomycetota
Pseudoclavibacter sp. VKM Ac-2867 [JADKSL]
106
33
-
Gly
CCC
[ENA]
¡û
>W2110329944
JADKSM010000001
Actinomycetota
Pseudoclavibacter sp. VKM Ac-2888 [JADKSM]
2585856
2585929
+
Gly
CCC
[ENA]
¡û
>W2110522621
JAGEKO010000011
Actinomycetota
Agrococcus sp. TF02-5 [JAGEKO]
43423
43350
-
Gly
CCC
[ENA]
¡û
>W2110563763
JAGPXK010000011
Actinomycetota
Nocardiopsis sp. B62 [JAGPXK]
176495
176423
-
Gly
CCC
[ENA]
¡û
>W2110668526
JAIBOA010000003
Actinomycetota
Actinomadura sp. PM05-2 [JAIBOA]
300645
300718
+
Gly
CCC
[ENA]
¡û
>C201261332
CP053344
Actinomycetota
Herbiconiux sp. SALV-R1 [CP053344]
3886828
3886901
+
Gly
CCC
-
¡û
>C211153119
CP061771
Actinomycetota
Salinibacterium sp. ZJ450 [CP061771]
3648917
3648990
+
Gly
CCC
-
¡û
>C211277197
CP070501
Actinomycetota
Agrococcus sp. Marseille-Q4369 [CP070501]
1536008
1535935
-
Gly
CCC
-
¡û
>C211329044
CP074133
Actinomycetota
Nocardiopsis sp. Mg02 [CP074133]
6823466
6823538
+
Gly
CCC
-
¡û
>C211381553
CP080599
Actinomycetota
Nocardiopsis sp. MT53 [CP080599]
1807163
1807235
+
Gly
CCC
-
¡û
>C231019658
AP025737
Actinomycetota
Herbiconiux sp. L3-i23 [AP025737]
3097389
3097316
-
Gly
CCC
-
¡û
>C231165035
CP080203
Actinomycetota
Mycetocola spongiae MSC19 [CP080203]
2218233
2218160
-
Gly
CCC
-
¡û
>C231201746
CP085036
Actinomycetota
Microbacteriaceae bacterium SG_E_30_P1 [CP085036]
1375703
1375776
+
Gly
CCC
-
¡û
>C231248193
CP087997
Actinomycetota
Subtercola sp. AK-R2A1-2 [CP087997]
3277984
3278056
+
Gly
CCC
-
¡û
>C231359262
CP095269
Actinomycetota
Agrococcus sp. SCSIO52902 [CP095269]
1206324
1206396
+
Gly
CCC
-
¡û
>C231548249
CP113264
Actinomycetota
Streptomonospora nanhaiensis 12A09 [CP113264]
6881566
6881639
+
Gly
CCC
-
¡û
>C241137927
CP049862
Actinomycetota
Sanguibacter sp. HDW7 [CP049862]
3086597
3086669
+
Gly
CCC
-
¡û
>W2310022360
BSEW01000001
Actinomycetota
Herbiconiux flava VKM Ac-2058 [BSEW]
823916
823988
+
Gly
CCC
[ENA]
¡û
>W2310027183
BSQG01000011
Actinomycetota
Nocardiopsis ansamitocini NBRC 112285 [BSQG]
122400
122472
+
Gly
CCC
[ENA]
¡û
>W1511352747
JROO01000009
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
27365
27294
-
Gly
CCC
[ENA]
¡û
>W1511584553
LAVM01000022
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
41769
41696
-
Gly
CCC
[ENA]
¡û
>W1610068756
BCRO01000071
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
68840
68913
+
Gly
CCC
[ENA]
¡û
>W1610112260
CZJS01000158
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
15976
16049
+
Gly
CCC
[ENA]
¡û
>W1610112533
CZJY01000049
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
154677
154604
-
Gly
CCC
[ENA]
¡û
>W1610722695
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1187855
1187782
-
Gly
CCC
[ENA]
¡û
>W1610723676
LMDN01000004
Actinomycetota
Leifsonia sp. Root4 [LMDN]
479054
478983
-
Gly
CCC
[ENA]
¡û
>W1610724683
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
139103
139176
+
Gly
CCC
[ENA]
¡û
>W1610727809
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
139072
139145
+
Gly
CCC
[ENA]
¡û
>W1610735675
LMMR01000008
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
203721
203648
-
Gly
CCC
[ENA]
¡û
>W1610737834
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
1068438
1068367
-
Gly
CCC
[ENA]
¡û
>W1610742103
LMRW01000013
Actinomycetota
Agromyces sp. Soil535 [LMRW]
61811
61882
+
Gly
CCC
[ENA]
¡û
>W1710066129
BCRO01000071
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
68840
68913
+
Gly
CCC
[ENA]
¡û
>W1710114964
CZJS01000158
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
15976
16049
+
Gly
CCC
[ENA]
¡û
>W1710115237
CZJY01000049
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
154677
154604
-
Gly
CCC
[ENA]
¡û
>W1710532013
FNPZ01000001
Actinomycetota
Herbiconiux ginsengi [FNPZ]
1230878
1230807
-
Gly
CCC
[ENA]
¡û
>W1710570922
FOVM01000004
Actinomycetota
Mycetocola miduiensis [FOVM]
41236
41163
-
Gly
CCC
[ENA]
¡û
>W1710588499
FQZK01000009
Actinomycetota
Nocardiopsis flavescens [FQZK]
210334
210261
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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