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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87183 (63 seq.)
>W1710871475
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
712533
712620
+
Ser
TGA
[ENA]
¡û
>W1710871476
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
713028
713115
+
Ser
TGA
[ENA]
¡û
>W1710871507
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180061
180148
+
Ser
TGA
[ENA]
¡û
>W1710871508
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180162
180249
+
Ser
TGA
[ENA]
¡û
>W1710871509
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180445
180532
+
Ser
TGA
[ENA]
¡û
>W1710871510
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180546
180633
+
Ser
TGA
[ENA]
¡û
>W131052248
AMYV01000009
Gammaproteobacteria
gamma proteobacterium WG36 [AMYV]
41674
41587
-
Ser
TGA
[ENA]
¡û
>W131052249
AMYV01000009
Gammaproteobacteria
gamma proteobacterium WG36 [AMYV]
39191
39104
-
Ser
TGA
[ENA]
¡û
>W1711680162
MRWD01000001
Gammaproteobacteria
Rouxiella silvae [MRWD]
34495
34408
-
Ser
TGA
[ENA]
¡û
>W1711680163
MRWD01000001
Gammaproteobacteria
Rouxiella silvae [MRWD]
33979
33892
-
Ser
TGA
[ENA]
¡û
>W1711680272
MRWE01000032
Gammaproteobacteria
Rouxiella badensis [MRWE]
23515
23428
-
Ser
TGA
[ENA]
¡û
>W1711680273
MRWE01000032
Gammaproteobacteria
Rouxiella badensis [MRWE]
21033
20946
-
Ser
TGA
[ENA]
¡û
>C181035739
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
667621
667708
+
Ser
TGA
-
¡û
>C181035740
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
667892
667979
+
Ser
TGA
-
¡û
>C191087395
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
1683612
1683699
+
Ser
TGA
-
¡û
>C191087396
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
1683895
1683982
+
Ser
TGA
-
¡û
>C191126432
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
1624831
1624918
+
Ser
TGA
-
¡û
>C191126433
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
1625114
1625201
+
Ser
TGA
-
¡û
>C191126508
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
1625528
1625615
+
Ser
TGA
-
¡û
>C191126509
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
1625811
1625898
+
Ser
TGA
-
¡û
>C191126585
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
1772409
1772496
+
Ser
TGA
-
¡û
>C191126586
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
1772692
1772779
+
Ser
TGA
-
¡û
>C191151784
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
4383202
4383289
+
Ser
TGA
-
¡û
>C191151785
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
4383485
4383572
+
Ser
TGA
-
¡û
>W141710711
JMPO01000019
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
1085
1172
+
Ser
TGA
[ENA]
¡û
>W141710712
JMPO01000019
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
1372
1459
+
Ser
TGA
[ENA]
¡û
>W141816153
JQJR01000001
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
154123
154036
-
Ser
TGA
[ENA]
¡û
>W141816154
JQJR01000001
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
153840
153753
-
Ser
TGA
[ENA]
¡û
>W1910584921
JYDF01000033
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
18589
18502
-
Ser
TGA
[ENA]
¡û
>W1910584922
JYDF01000033
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
18306
18219
-
Ser
TGA
[ENA]
¡û
>W1910649341
LXYV01000061
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
1175
1262
+
Ser
TGA
[ENA]
¡û
>W1910655841
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
1673933
1673846
-
Ser
TGA
[ENA]
¡û
>W1910655842
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
1673649
1673562
-
Ser
TGA
[ENA]
¡û
>W1910696139
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
186941
187028
+
Ser
TGA
[ENA]
¡û
>W1910696140
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
187225
187312
+
Ser
TGA
[ENA]
¡û
>W1910750389
MJIB01000004
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
224570
224657
+
Ser
TGA
[ENA]
¡û
>W1910750390
MJIB01000004
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
224853
224940
+
Ser
TGA
[ENA]
¡û
>W1911239318
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
3640110
3640023
-
Ser
TGA
[ENA]
¡û
>W1911686114
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
994298
994385
+
Ser
TGA
[ENA]
¡û
>W1911693629
QLTF01000005
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
5699
5786
+
Ser
TGA
[ENA]
¡û
>W1911693630
QLTF01000005
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
5982
6069
+
Ser
TGA
[ENA]
¡û
>W1810149979
PITQ01000002
Gammaproteobacteria
Rahnella sp. AA [PITQ]
79166
79079
-
Ser
TGA
[ENA]
¡û
>SRA1015204
SRR023845.498016
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
12
99
+
Ser
TGA
[SRA]
>C11118325
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
1713237
1713324
+
Ser
TGA
[Ensembl]
¡û
>C11118326
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
1713520
1713607
+
Ser
TGA
[Ensembl]
¡û
>W1511358083
JRWU01000001
Gammaproteobacteria
Rouxiella chamberiensis 130333 [JRWU]
605178
605265
+
Ser
TGA
[ENA]
¡û
>W1511358084
JRWU01000001
Gammaproteobacteria
Rouxiella chamberiensis 130333 [JRWU]
608041
608128
+
Ser
TGA
[ENA]
¡û
>W1511433743
JUHL01000007
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
143843
143756
-
Ser
TGA
[ENA]
¡û
>W1511433744
JUHL01000007
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
143556
143469
-
Ser
TGA
[ENA]
¡û
>W1511433809
JUHM01000009
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
77514
77601
+
Ser
TGA
[ENA]
¡û
>W1511433810
JUHM01000009
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
77801
77888
+
Ser
TGA
[ENA]
¡û
>C121009617
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
1717033
1717120
+
Ser
TGA
[Ensembl]
¡û
>C121009618
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
1717320
1717407
+
Ser
TGA
[Ensembl]
¡û
>C121012471
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
1664229
1664316
+
Ser
TGA
[Ensembl]
¡û
>C121012472
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
1664512
1664599
+
Ser
TGA
[Ensembl]
¡û
>W121062059
AJHJ01000009
Gammaproteobacteria
Serratia sp. M24T3 [AJHJ]
45367
45280
-
Ser
TGA
[ENA]
¡û
>W121062060
AJHJ01000009
Gammaproteobacteria
Serratia sp. M24T3 [AJHJ]
44445
44358
-
Ser
TGA
[ENA]
¡û
>W1610733821
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
712533
712620
+
Ser
TGA
[ENA]
¡û
>W1610733822
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
713028
713115
+
Ser
TGA
[ENA]
¡û
>W1610733853
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180061
180148
+
Ser
TGA
[ENA]
¡û
>W1610733854
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180162
180249
+
Ser
TGA
[ENA]
¡û
>W1610733855
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180445
180532
+
Ser
TGA
[ENA]
¡û
>W1610733856
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
180546
180633
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK