This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.872251 (138 seq.)
>C171129711
LT629973
Verrucomicrobiota
Akkermansia glycaniphila [LT629973]
774427
774354
-
Gly
TCC
-
¡û
>WENV180126220
OASZ01001262
[OASZ] human gut metagenome; faeces
1333
1406
+
Gly
TCC
[ENA]
¡û
>WENV180162711
OAVH01000052
[OAVH] human gut metagenome; faeces
74311
74238
-
Gly
TCC
[ENA]
¡û
>WENV180170512
OAVV01000425
[OAVV] human gut metagenome; faeces
208
135
-
Gly
TCC
[ENA]
¡û
>WENV180179419
OAWJ01001378
[OAWJ] human gut metagenome; faeces
7993
8066
+
Gly
TCC
[ENA]
¡û
>WENV180221730
OBBA01026325
[OBBA] human gut metagenome; human gut
333
260
-
Gly
TCC
[ENA]
¡û
>WENV180407199
OBUQ01000615
[OBUQ] human gut metagenome; faeces
2910
2983
+
Gly
TCC
[ENA]
¡û
>WENV180413741
OBVC01000023
[OBVC] human gut metagenome; faeces
11038
11111
+
Gly
TCC
[ENA]
¡û
>WENV180434325
OBWL01000095
[OBWL] human gut metagenome; faeces
37041
37114
+
Gly
TCC
[ENA]
¡û
>WENV180440446
OBWV01000393
[OBWV] human gut metagenome; faeces
41184
41111
-
Gly
TCC
[ENA]
¡û
>WENV180462197
OBYB01000436
[OBYB] human gut metagenome; faeces
8056
8129
+
Gly
TCC
[ENA]
¡û
>WENV180471747
OBYP01001710
[OBYP] human gut metagenome; faeces
2931
3004
+
Gly
TCC
[ENA]
¡û
>WENV180477403
OBYZ01000665
[OBYZ] human gut metagenome; faeces
2932
3005
+
Gly
TCC
[ENA]
¡û
>WENV180490807
OBZU01038686
[OBZU] human gut metagenome; faeces
192
119
-
Gly
TCC
[ENA]
¡û
>WENV180490903
OBZV01000031
[OBZV] human gut metagenome; faeces
2935
3008
+
Gly
TCC
[ENA]
¡û
>WENV180618895
OCQB01000736
[OCQB] human gut metagenome; human gut
5122
5195
+
Gly
TCC
[ENA]
¡û
>WENV180730500
ODGV01006917
[ODGV] human metagenome; G_DNA_Stool
281
354
+
Gly
TCC
[ENA]
¡û
>WENV180742272
ODHH01003298
[ODHH] human metagenome; G_DNA_Stool
394
467
+
Gly
TCC
[ENA]
¡û
>WENV180812251
ODJN01007558
[ODJN] human metagenome; G_DNA_Stool
1304
1231
-
Gly
TCC
[ENA]
¡û
>WENV180886134
ODME01026396
[ODME] human metagenome; G_DNA_Stool
986
913
-
Gly
TCC
[ENA]
¡û
>WENV180957378
ODUK01037465
[ODUK] human metagenome; G_DNA_Stool
385
458
+
Gly
TCC
[ENA]
¡û
>WENV180997588
ODVS01043477
[ODVS] human metagenome; G_DNA_Stool
401
474
+
Gly
TCC
[ENA]
¡û
>WENV181036753
ODXP01002719
[ODXP] human metagenome; G_DNA_Stool
8425
8352
-
Gly
TCC
[ENA]
¡û
>WENV181116813
OEFH01000001
[OEFH] human metagenome; G_DNA_Stool
310318
310391
+
Gly
TCC
[ENA]
¡û
>WENV181219481
OFCP01000020
[OFCP] metagenome; Human gut stool
89527
89600
+
Gly
TCC
[ENA]
¡û
>WENV181221089
OFCU01000088
[OFCU] metagenome; Human gut stool
29925
29852
-
Gly
TCC
[ENA]
¡û
>WENV181331446
OFLZ01003976
[OFLZ] human gut metagenome; human gut
1576
1649
+
Gly
TCC
[ENA]
¡û
>WENV181344012
OFMJ01041607
[OFMJ] human gut metagenome; human gut
380
453
+
Gly
TCC
[ENA]
¡û
>WENV181444387
OGDR01000012
[OGDR] metagenome; Human gut stool
130431
130358
-
Gly
TCC
[ENA]
¡û
>WENV181463892
OGEP01000013
[OGEP] metagenome; Human gut stool
85492
85565
+
Gly
TCC
[ENA]
¡û
>WENV181603277
OGLI01000001
[OGLI] metagenome; Human gut stool
503025
502952
-
Gly
TCC
[ENA]
¡û
>WENV181663752
OGOI01000012
[OGOI] human gut metagenome; faeces
36626
36699
+
Gly
TCC
[ENA]
¡û
>WENV181692785
OGPA01000984
[OGPA] human gut metagenome; faeces
22653
22580
-
Gly
TCC
[ENA]
¡û
>WENV181715619
OGPS01000341
[OGPS] human gut metagenome; faeces
42979
42906
-
Gly
TCC
[ENA]
¡û
>WENV181732503
OGQD01045122
[OGQD] human gut metagenome; faeces
385
458
+
Gly
TCC
[ENA]
¡û
>WENV181741768
OGQK01001915
[OGQK] human gut metagenome; faeces
1338
1411
+
Gly
TCC
[ENA]
¡û
>WENV181782651
OGRK01043683
[OGRK] human gut metagenome; faeces
420
347
-
Gly
TCC
[ENA]
¡û
>WENV181824202
OGUK01000343
[OGUK] human gut metagenome; faeces
26140
26213
+
Gly
TCC
[ENA]
¡û
>WENV181827403
OGUM01002300
[OGUM] human gut metagenome; faeces
8504
8431
-
Gly
TCC
[ENA]
¡û
>WENV181877970
OGXE01000476
[OGXE] human gut metagenome; faeces
26266
26193
-
Gly
TCC
[ENA]
¡û
>WENV181889188
OGXN01000008
[OGXN] human gut metagenome; faeces
150210
150137
-
Gly
TCC
[ENA]
¡û
>WENV181897271
OGXT01000037
[OGXT] human gut metagenome; faeces
89877
89950
+
Gly
TCC
[ENA]
¡û
>WENV181899514
OGXU01004724
[OGXU] human gut metagenome; faeces
4383
4310
-
Gly
TCC
[ENA]
¡û
>WENV181902755
OGXW01097687
[OGXW] human gut metagenome; faeces
432
505
+
Gly
TCC
[ENA]
¡û
>WENV181919599
OGYI01001508
[OGYI] human gut metagenome; faeces
4346
4273
-
Gly
TCC
[ENA]
¡û
>WENV181924983
OGYM01000008
[OGYM] human gut metagenome; faeces
21864
21791
-
Gly
TCC
[ENA]
¡û
>WENV181934269
OGYT01003966
[OGYT] human gut metagenome; faeces
5764
5691
-
Gly
TCC
[ENA]
¡û
>WENV181938006
OGYW01002092
[OGYW] human gut metagenome; faeces
10001
10074
+
Gly
TCC
[ENA]
¡û
>WENV181940611
OGYY01000036
[OGYY] human gut metagenome; faeces
84464
84537
+
Gly
TCC
[ENA]
¡û
>WENV181977145
OHAD01017840
[OHAD] human gut metagenome; faeces
1611
1538
-
Gly
TCC
[ENA]
¡û
>WENV182025864
OHCJ01011719
[OHCJ] human gut metagenome; feces
422
349
-
Gly
TCC
[ENA]
¡û
>WENV182026320
OHCK01003490
[OHCK] human gut metagenome; feces
485
412
-
Gly
TCC
[ENA]
¡û
>WENV182031648
OHCT01000024
[OHCT] human gut metagenome; feces
89860
89933
+
Gly
TCC
[ENA]
¡û
>WENV182034255
OHCY01000025
[OHCY] human gut metagenome; feces
92053
92126
+
Gly
TCC
[ENA]
¡û
>WENV182042223
OHDN01001589
[OHDN] human gut metagenome; feces
9477
9404
-
Gly
TCC
[ENA]
¡û
>WENV182052483
OHEH01004082
[OHEH] human gut metagenome; feces
1948
1875
-
Gly
TCC
[ENA]
¡û
>WENV182106120
OHII01000021
[OHII] human gut metagenome; feces
39381
39308
-
Gly
TCC
[ENA]
¡û
>WENV182112339
OHIU01003645
[OHIU] human gut metagenome; feces
558
485
-
Gly
TCC
[ENA]
¡û
>WENV182135623
OHKJ01000763
[OHKJ] human gut metagenome; feces
3293
3220
-
Gly
TCC
[ENA]
¡û
>WENV182137368
OHKL01000980
[OHKL] human gut metagenome; feces
1450
1523
+
Gly
TCC
[ENA]
¡û
>WENV182166061
OHMP01000453
[OHMP] human gut metagenome; feces
12272
12345
+
Gly
TCC
[ENA]
¡û
>WENV182196718
OHPG01000028
[OHPG] human gut metagenome; feces
39381
39308
-
Gly
TCC
[ENA]
¡û
>WENV182200565
OHPL01001235
[OHPL] human gut metagenome; feces
7950
7877
-
Gly
TCC
[ENA]
¡û
>WENV182208080
OHPX01000492
[OHPX] human gut metagenome; feces
10221
10294
+
Gly
TCC
[ENA]
¡û
>WENV182211660
OHQF01002422
[OHQF] human gut metagenome; feces
4717
4644
-
Gly
TCC
[ENA]
¡û
>WENV182222875
OHQY01024427
[OHQY] human gut metagenome; feces
530
457
-
Gly
TCC
[ENA]
¡û
>WENV182239012
OHSA01001235
[OHSA] human gut metagenome; feces
7678
7605
-
Gly
TCC
[ENA]
¡û
>WENV182248757
OHSP01000642
[OHSP] human gut metagenome; feces
9065
8992
-
Gly
TCC
[ENA]
¡û
>WENV182265757
OHTW01027413
[OHTW] human gut metagenome; feces
81
154
+
Gly
TCC
[ENA]
¡û
>WENV182517934
OIWP01000027
[OIWP] human gut metagenome; faeces
122669
122596
-
Gly
TCC
[ENA]
¡û
>WENV182712803
OJPF01005202
[OJPF] human gut metagenome; stool sample
2704
2631
-
Gly
TCC
[ENA]
¡û
>WENV182715157
OJPI01000342
[OJPI] human gut metagenome; stool sample
28689
28616
-
Gly
TCC
[ENA]
¡û
>WENV182746304
OJQU01001026
[OJQU] human gut metagenome; stool sample
3201
3128
-
Gly
TCC
[ENA]
¡û
>WENV182752753
OJRC01000005
[OJRC] human gut metagenome; stool sample
93784
93857
+
Gly
TCC
[ENA]
¡û
>WENV182882613
OKSB01000856
[OKSB] human gut metagenome; faeces
10297
10370
+
Gly
TCC
[ENA]
¡û
>WENV182894278
OKSL01000948
[OKSL] human gut metagenome; feces
4115
4188
+
Gly
TCC
[ENA]
¡û
>WENV182911666
OKTL01003731
[OKTL] human gut metagenome; feces
2052
1979
-
Gly
TCC
[ENA]
¡û
>WENV183024073
OLFT01000012
[OLFT] human gut metagenome; faeces
89860
89933
+
Gly
TCC
[ENA]
¡û
>WENV183030311
OLFX01000028
[OLFX] human gut metagenome; faeces
133395
133322
-
Gly
TCC
[ENA]
¡û
>WENV183046326
OLGF01000008
[OLGF] human gut metagenome; faeces
124784
124711
-
Gly
TCC
[ENA]
¡û
>WENV183061929
OLIC01001211
[OLIC] metagenome; faeces
132
205
+
Gly
TCC
[ENA]
¡û
>WENV183062969
OLIF01000113
[OLIF] metagenome; faeces
10232
10305
+
Gly
TCC
[ENA]
¡û
>WENV183189910
OLPQ01020595
[OLPQ] human gut metagenome; faeces
1170
1097
-
Gly
TCC
[ENA]
¡û
>WENV183215942
OLQH01000008
[OLQH] human gut metagenome; faeces
89860
89933
+
Gly
TCC
[ENA]
¡û
>WENV183231999
OLQU01001808
[OLQU] human gut metagenome; faeces
13200
13127
-
Gly
TCC
[ENA]
¡û
>WENV183273852
OLRY01000008
[OLRY] human gut metagenome; faeces
89526
89599
+
Gly
TCC
[ENA]
¡û
>WENV183296564
OLSM01000013
[OLSM] human gut metagenome; faeces
97565
97492
-
Gly
TCC
[ENA]
¡û
>WENV183313517
OLVR01000020
[OLVR] human gut metagenome; faeces
90231
90304
+
Gly
TCC
[ENA]
¡û
>WENV183347281
OLWT01003799
[OLWT] human gut metagenome; feces
4813
4740
-
Gly
TCC
[ENA]
¡û
>WENV183352416
OLWZ01021244
[OLWZ] human gut metagenome; feces
650
577
-
Gly
TCC
[ENA]
¡û
>WENV183362848
OLXK01039299
[OLXK] human gut metagenome; feces
242
315
+
Gly
TCC
[ENA]
¡û
>WENV183365545
OLXN01012796
[OLXN] human gut metagenome; feces
360
433
+
Gly
TCC
[ENA]
¡û
>WENV183372686
OLXX01000011
[OLXX] human gut metagenome; feces
64829
64756
-
Gly
TCC
[ENA]
¡û
>WENV183385467
OLYP01000106
[OLYP] human gut metagenome; feces
5052
5125
+
Gly
TCC
[ENA]
¡û
>WENV183397604
OLZL01000136
[OLZL] human gut metagenome; feces
762
689
-
Gly
TCC
[ENA]
¡û
>WENV183398130
OLZO01000020
[OLZO] human gut metagenome; feces
90231
90304
+
Gly
TCC
[ENA]
¡û
>WENV183400773
OLZS01000582
[OLZS] human gut metagenome; feces
2122
2195
+
Gly
TCC
[ENA]
¡û
>WENV183463311
OMDY01000015
[OMDY] human gut metagenome; feces
64829
64756
-
Gly
TCC
[ENA]
¡û
>WENV183493081
OMGI01006105
[OMGI] human gut metagenome; human gut
3332
3405
+
Gly
TCC
[ENA]
¡û
>WENV183634142
OOIG01010246
[OOIG] human gut metagenome; human gut
3602
3529
-
Gly
TCC
[ENA]
¡û
>WENV183764578
PPYE01320077
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
23847
23774
-
Gly
TCC
[ENA]
¡û
>WENV183771630
PPYF01000001
[PPYF] human gut metagenome; stool from patient with Crohn's disease
89876
89949
+
Gly
TCC
[ENA]
¡û
>WENV170025913
CDTW01002197
[CDTW] gut metagenome; human stools
32313
32240
-
Gly
TCC
[ENA]
¡û
>WENV170053111
CDZD01006407
[CDZD] gut metagenome; human stools
133680
133607
-
Gly
TCC
[ENA]
¡û
>WENV170056325
CDZF01046272
[CDZF] gut metagenome; human stools
89550
89623
+
Gly
TCC
[ENA]
¡û
>W1810169438
PJKA01000012
Verrucomicrobiota
Akkermansia muciniphila GP24 [PJKA]
522919
522846
-
Gly
TCC
[ENA]
¡û
>W1810169470
PJKB01000001
Verrucomicrobiota
Akkermansia muciniphila GP22 [PJKB]
1293981
1293908
-
Gly
TCC
[ENA]
¡û
>W1810169514
PJKC01000001
Verrucomicrobiota
Akkermansia muciniphila GP42 [PJKC]
407879
407952
+
Gly
TCC
[ENA]
¡û
>W1810169590
PJKD01000008
Verrucomicrobiota
Akkermansia muciniphila GP30 [PJKD]
90348
90421
+
Gly
TCC
[ENA]
¡û
>W1810169629
PJKE01000003
Verrucomicrobiota
Akkermansia muciniphila GP25 [PJKE]
217385
217458
+
Gly
TCC
[ENA]
¡û
>W1810169679
PJKF01000008
Verrucomicrobiota
Akkermansia muciniphila GP15 [PJKF]
40026
40099
+
Gly
TCC
[ENA]
¡û
>W1810169736
PJKG01000006
Verrucomicrobiota
Akkermansia muciniphila GP12 [PJKG]
198635
198562
-
Gly
TCC
[ENA]
¡û
>W1810169785
PJKH01000010
Verrucomicrobiota
Akkermansia muciniphila GP11 [PJKH]
99596
99523
-
Gly
TCC
[ENA]
¡û
>W1810169844
PJKI01000023
Verrucomicrobiota
Akkermansia muciniphila GP10 [PJKI]
155961
155888
-
Gly
TCC
[ENA]
¡û
>W1810169883
PJKJ01000007
Verrucomicrobiota
Akkermansia muciniphila GP08 [PJKJ]
9991
10064
+
Gly
TCC
[ENA]
¡û
>W1810169920
PJKK01000014
Verrucomicrobiota
Akkermansia muciniphila GP07 [PJKK]
152298
152225
-
Gly
TCC
[ENA]
¡û
>W1810169952
PJKL01000001
Verrucomicrobiota
Akkermansia muciniphila BSH05 [PJKL]
727016
726943
-
Gly
TCC
[ENA]
¡û
>W1810169990
PJKM01000001
Verrucomicrobiota
Akkermansia muciniphila BSH01 [PJKM]
493584
493511
-
Gly
TCC
[ENA]
¡û
>W2010285671
CABMLH010000014
Verrucomicrobiota
Akkermansia muciniphila [CABMLH]
152298
152225
-
Gly
TCC
[ENA]
¡û
>W2010285826
CABMLK010000001
Verrucomicrobiota
Akkermansia muciniphila [CABMLK]
1293981
1293908
-
Gly
TCC
[ENA]
¡û
>W2110177504
JABFCI010000003
Verrucomicrobiota
Akkermansia sp. GGCC_0220 [JABFCI]
89527
89600
+
Gly
TCC
[ENA]
¡û
>W2110275908
JACVVN010000012
Verrucomicrobiota
Akkermansia glycaniphila GP37 [JACVVN]
616261
616334
+
Gly
TCC
[ENA]
¡û
>C211035366
CP029701
Verrucomicrobiota
Akkermansia muciniphila EB-AMDK-40 [CP029701]
1916820
1916893
+
Gly
TCC
-
¡û
>C211035419
CP029702
Verrucomicrobiota
Akkermansia muciniphila EB-AMDK-41 [CP029702]
1916828
1916901
+
Gly
TCC
-
¡û
>C211035684
CP029753
Verrucomicrobiota
Akkermansia muciniphila EB-AMDK-39 [CP029753]
1916871
1916944
+
Gly
TCC
-
¡û
>C211299147
CP072017
Verrucomicrobiota
Akkermansia muciniphila AkkB40 [CP072017]
1920978
1921051
+
Gly
TCC
-
¡û
>C211299254
CP072019
Verrucomicrobiota
Akkermansia muciniphila Akk2680 [CP072019]
1828025
1828098
+
Gly
TCC
-
¡û
>C211299360
CP072021
Verrucomicrobiota
Akkermansia muciniphila Akk2196 [CP072021]
1828145
1828218
+
Gly
TCC
-
¡û
>C211299413
CP072022
Verrucomicrobiota
Akkermansia muciniphila Akk2190 [CP072022]
1828169
1828242
+
Gly
TCC
-
¡û
>C211299574
CP072025
Verrucomicrobiota
Akkermansia muciniphila Akk2000 [CP072025]
1828169
1828242
+
Gly
TCC
-
¡û
>C211299681
CP072027
Verrucomicrobiota
Akkermansia muciniphila Akk1863 [CP072027]
2012712
2012785
+
Gly
TCC
-
¡û
>C211300160
CP072036
Verrucomicrobiota
Akkermansia muciniphila Akk1573 [CP072036]
1825640
1825713
+
Gly
TCC
-
¡û
>C211300265
CP072038
Verrucomicrobiota
Akkermansia muciniphila Akk1476 [CP072038]
1828144
1828217
+
Gly
TCC
-
¡û
>C211300583
CP072044
Verrucomicrobiota
Akkermansia muciniphila Akk0580 [CP072044]
1826405
1826478
+
Gly
TCC
-
¡û
>W2310017614
BQOH01000001
Verrucomicrobiota
Akkermansia muciniphila CE91-St26 [BQOH]
1892661
1892734
+
Gly
TCC
[ENA]
¡û
>W2310027550
BSQU01000003
Verrucomicrobiota
Akkermansia sp. NBRC 115031 [BSQU]
92592
92665
+
Gly
TCC
[ENA]
¡û
>W1610628915
LIGX01000032
Verrucomicrobiota
Akkermansia glycaniphila [LIGX]
134481
134554
+
Gly
TCC
[ENA]
¡û
>W1710760048
LIGX01000032
Verrucomicrobiota
Akkermansia glycaniphila [LIGX]
134481
134554
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK