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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88677 (7 seq.)
>WENV170012437
ASRK01000059
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23942
23854
-
Ser
TGA
[ENA]
¡û
>WENV170012521
ASRL01000062
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23941
23853
-
Ser
TGA
[ENA]
¡û
>WENV170012586
ASRM01000075
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
63
151
+
Ser
TGA
[ENA]
¡û
>WENV170012660
ASRN01000059
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23952
23864
-
Ser
TGA
[ENA]
¡û
>C191084655
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2679333
2679245
-
Ser
TGA
-
¡û
>W1911419388
NXAO01000050
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21307
21395
+
Ser
TGA
[ENA]
¡û
>W2011139286
NXAO01000050
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21307
21395
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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