This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88872 (60 seq.)
>W131181661
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
4011906
4011993
+
Tyr
GTA
[ENA]
¡û
>W1711503994
MKUD01000029
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
40368
40283
-
Tyr
GTA
[ENA]
¡û
>W1711606580
MORL01000005
Bacteroidota
Arsenicibacter rosenii [MORL]
179844
179759
-
Tyr
GTA
[ENA]
¡û
>W1711769469
MVEC01000019
Bacteroidota
Spirosoma sp. 209 [MVEC]
79342
79427
+
Tyr
GTA
[ENA]
¡û
>C171030737
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
5003421
5003504
+
Tyr
GTA
-
¡û
>C171037564
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
871238
871153
-
Tyr
GTA
-
¡û
>C171104390
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
6621179
6621264
+
Tyr
GTA
-
¡û
>C171104458
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
672856
672771
-
Tyr
GTA
-
¡û
>W131169822
ARFA01000026
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
86053
86138
+
Tyr
GTA
[ENA]
¡û
>W131169901
ARFC01000010
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
88623
88538
-
Tyr
GTA
[ENA]
¡û
>W131169918
ARFD01000008
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
102600
102685
+
Tyr
GTA
[ENA]
¡û
>W141242800
CAIT01000010
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
49017
49102
+
Tyr
GTA
[ENA]
¡û
>W09109914
ABUR01000006
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
123368
123283
-
Tyr
GTA
[ENA]
¡û
>C181113115
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
1107853
1107936
+
Tyr
GTA
-
¡û
>W1911497276
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
833353
833439
+
Tyr
GTA
[ENA]
¡û
>W1911726797
QTJY01000004
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
272509
272594
+
Tyr
GTA
[ENA]
¡û
>W1911766812
QXED01000004
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
91056
91139
+
Tyr
GTA
[ENA]
¡û
>W1810364359
PVTE01000002
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
29155
29070
-
Tyr
GTA
[ENA]
¡û
>W1810692066
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4335528
4335613
+
Tyr
GTA
[ENA]
¡û
>W1810694537
QLMC01000001
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
349766
349849
+
Tyr
GTA
[ENA]
¡û
>W1810745134
QOWE01000009
Bacteroidota
Larkinella punicea zzj9 [QOWE]
193335
193250
-
Tyr
GTA
[ENA]
¡û
>SRA1014276
SRR023845.68048
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
46
-
Tyr
GTA
[SRA]
>SRA1014739
SRR023845.291170
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
130
45
-
Tyr
GTA
[SRA]
>C151068623
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
5969887
5969802
-
Tyr
GTA
[Ensembl]
¡û
>W2010459319
JAAFZH010000001
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
201518
201603
+
Tyr
GTA
[ENA]
¡û
>W2010468877
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
203092
203175
+
Tyr
GTA
[ENA]
¡û
>W2011158180
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
833353
833439
+
Tyr
GTA
[ENA]
¡û
>W2011292515
QTJY01000004
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
272509
272594
+
Tyr
GTA
[ENA]
¡û
>W2011324959
QXED01000004
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
91056
91139
+
Tyr
GTA
[ENA]
¡û
>W2011477461
RQJO01000015
Bacteroidota
Larkinella rosea KCTC52004 [RQJO]
611453
611536
+
Tyr
GTA
[ENA]
¡û
>W2011477504
RQJP01000006
Bacteroidota
Larkinella knui KCTC42998 [RQJP]
194447
194364
-
Tyr
GTA
[ENA]
¡û
>W2011532770
SBLB01000008
Bacteroidota
Spirosoma sp. TY50 [SBLB]
244934
244851
-
Tyr
GTA
[ENA]
¡û
>W2011658085
SODS01000009
Bacteroidota
Larkinella sp. BK230 [SODS]
1041437
1041352
-
Tyr
GTA
[ENA]
¡û
>W2011705617
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
80945
81030
+
Tyr
GTA
[ENA]
¡û
>W2011964850
VBSL01000007
Bacteroidota
Larkinella sp. C7 [VBSL]
289634
289719
+
Tyr
GTA
[ENA]
¡û
>W2012146729
VTWS01000003
Bacteroidota
Larkinella sp. MA1 [VTWS]
577752
577667
-
Tyr
GTA
[ENA]
¡û
>W2012222096
WAEL01000003
Bacteroidota
Fibrella aestuarina JA25 [WAEL]
224202
224117
-
Tyr
GTA
[ENA]
¡û
>W2012311198
WELI01000002
Bacteroidota
Rudanella sp. HX-22-17 [WELI]
136071
135984
-
Tyr
GTA
[ENA]
¡û
>W2012355839
WJXZ01000004
Bacteroidota
Larkinella terrae KCTC 52001 [WJXZ]
353328
353413
+
Tyr
GTA
[ENA]
¡û
>W2012412128
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
4335528
4335613
+
Tyr
GTA
[ENA]
¡û
>W2012412206
WPIN01000024
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
60212
60297
+
Tyr
GTA
[ENA]
¡û
>W2110282936
JACWZY010000006
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
272041
272124
+
Tyr
GTA
[ENA]
¡û
>W2110283041
JACXAA010000012
Bacteroidota
Spirosoma validum BT704 [JACXAA]
165319
165236
-
Tyr
GTA
[ENA]
¡û
>W2110517325
JAFMYU010000004
Bacteroidota
Fibrella sp. HMF5036 [JAFMYU]
208880
208795
-
Tyr
GTA
[ENA]
¡û
>W2110517378
JAFMYV010000014
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
34850
34935
+
Tyr
GTA
[ENA]
¡û
>W2110517396
JAFMYW010000002
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
187218
187303
+
Tyr
GTA
[ENA]
¡û
>C201250740
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
1849065
1849150
+
Tyr
GTA
-
¡û
>C211124444
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
5973259
5973344
+
Tyr
GTA
-
¡û
>C231263206
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
5533038
5532953
-
Tyr
GTA
-
¡û
>C231279259
CP090557
Bacteroidota
Larkinella sp. IE-0392 [CP090557]
1642952
1643035
+
Tyr
GTA
-
¡û
>C231540533
CP110973
Bacteroidota
Larkinella insperata LMG22510 [CP110973]
2415906
2415989
+
Tyr
GTA
-
¡û
>W2110772272
VFIA01000006
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
48569
48654
+
Tyr
GTA
[ENA]
¡û
>W2110772303
VFIC01000003
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
263733
263648
-
Tyr
GTA
[ENA]
¡û
>C241057075
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
7108237
7108322
+
Tyr
GTA
-
¡û
>C241140706
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
205884
205801
-
Tyr
GTA
-
¡û
>C241156294
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
52157
52242
+
Tyr
GTA
-
¡û
>C241171829
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
1129418
1129503
+
Tyr
GTA
-
¡û
>C10111782
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
5434899
5434814
-
Tyr
GTA
[Ensembl]
¡û
>C161104962
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
1355496
1355581
+
Tyr
GTA
[Ensembl]
¡û
>W1710558207
FOLQ01000016
Bacteroidota
Spirosoma endophyticum [FOLQ]
112925
113010
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK