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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91368 (27 seq.)
>C171067998
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
2520672
2520757
+
Leu
CAG
-
¡û
>WENV180689498
OCZA010989402
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
69
154
+
Leu
CAG
[ENA]
¡û
>WENV182541942
OJAV01000040
[OJAV] seawater metagenome; Sea water
79848
79933
+
Leu
CAG
[ENA]
¡û
>WENV182542291
OJAY01000018
[OJAY] seawater metagenome; Sea water
79833
79918
+
Leu
CAG
[ENA]
¡û
>WENV182544039
OJBE01000051
[OJBE] seawater metagenome; Sea water
17483
17568
+
Leu
CAG
[ENA]
¡û
>WENV182546433
OJBO01032946
[OJBO] seawater metagenome; Sea water
493
408
-
Leu
CAG
[ENA]
¡û
>WENV182547000
OJBR01000112
[OJBR] seawater metagenome; Sea water
30050
29965
-
Leu
CAG
[ENA]
¡û
>WENV182549260
OJBY01000076
[OJBY] seawater metagenome; Sea water
33820
33905
+
Leu
CAG
[ENA]
¡û
>WENV182549900
OJBZ01000308
[OJBZ] seawater metagenome; Sea water
151
236
+
Leu
CAG
[ENA]
¡û
>WENV182555872
OJDD01004860
[OJDD] seawater metagenome; Sea water
537
622
+
Leu
CAG
[ENA]
¡û
>WENV182557487
OJDK01000044
[OJDK] seawater metagenome; Sea water
65986
65901
-
Leu
CAG
[ENA]
¡û
>WENV182559659
OJDQ01000839
[OJDQ] seawater metagenome; Sea water
2184
2099
-
Leu
CAG
[ENA]
¡û
>WENV182562223
OJDZ01000127
[OJDZ] seawater metagenome; Sea water
31634
31549
-
Leu
CAG
[ENA]
¡û
>WENV182588735
OJHW01011210
[OJHW] seawater metagenome; Sea water
341
256
-
Leu
CAG
[ENA]
¡û
>WENV183055159
OLGX01000034
[OLGX] seawater metagenome; Sea water
78409
78494
+
Leu
CAG
[ENA]
¡û
>WENV183057335
OLHL01000423
[OLHL] seawater metagenome; Sea water
16645
16560
-
Leu
CAG
[ENA]
¡û
>WENV183059587
OLHV01000030
[OLHV] seawater metagenome; Sea water
30050
29965
-
Leu
CAG
[ENA]
¡û
>WENV183522064
OMOM01000036
[OMOM] seawater metagenome; Sea water
78420
78505
+
Leu
CAG
[ENA]
¡û
>WENV170016516
AZIK01011467
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
48454
48369
-
Leu
CAG
[ENA]
¡û
>WENV170564904
CZQC01000024
[CZQC] hydrothermal vent metagenome; ocean water
25762
25847
+
Leu
CAG
[ENA]
¡û
>WENV170573073
FLOH01005530
[FLOH] marine metagenome; water
131
46
-
Leu
CAG
[ENA]
¡û
>WENV170935799
MDTG01263865
[MDTG] marine metagenome; seawater
2478
2563
+
Leu
CAG
[ENA]
¡û
>C151013093
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
2341663
2341748
+
Leu
CAG
[Ensembl]
¡û
>W2110740232
JALE01000012
Gammaproteobacteria
Thalassolituus oleivorans 4BN06-13 [JALE]
83732
83817
+
Leu
CAG
[ENA]
¡û
>C231070421
CP054475
Gammaproteobacteria
Thalassolituus hydrocarbonoclasticus alknpb1M-1 [CP054475]
1599277
1599192
-
Leu
CAG
-
¡û
>C231352911
CP094879
Gammaproteobacteria
Thalassolituus sp. C2-1 [CP094879]
1745757
1745672
-
Leu
CAG
-
¡û
>C131021023
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
1399261
1399176
-
Leu
CAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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